Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3117 |
Symbol | |
ID | 5611014 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3757252 |
End bp | 3758391 |
Gene Length | 1140 bp |
Protein Length | 379 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640934055 |
Product | alkaline phosphatase |
Protein accession | YP_001474849 |
Protein GI | 157376249 |
COG category | [C] Energy production and conversion |
COG ID | [COG1294] Cytochrome bd-type quinol oxidase, subunit 2 |
TIGRFAM ID | [TIGR00203] cytochrome d oxidase, subunit II (cydB) |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.768949 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTGATT ATGAAATGTT AAGATTGATC TGGTGGGCAC TGATTGGTGT GCTATTCATC GGGTTTGCTG TAACTGATGG TTTCGATATG GGAGTTGGCG CACTTTTGCC TATCATAGGT AAAGATGACA CCGAACGCCG TATCATGATC AACTCGATTG CTCCACATTG GGATGGTAAC CAGGTTTGGT TAATTACTGC AGGTGGCGCA CTGTTTGCTG CTTGGCCTAT GGTTTACGGT GTATCGTTCT CAGGATTCTA TGTCGCTATG ATGTTGGTCT TGTTTGCATT ATTCCTTCGT CCTGTTGGCT TCGATTACCG TTCAAAAATT GAAGATCCAA GATGGCGTAA GTCTTGGGAT TGGGCGTTGT TTGTCGGTGG TTTTGTTCCT CCGCTGATCA TTGGTGTTGC TTTTGGTAAC CTATTGCAAG GTGTGCCGTT TAACTTTGAC GAATACCTTC GTGCAACGTA CCACGGTGGC TTCTTCGGTC TACTGAACCC GTTTGGATTA CTGGCAGGTC TGGTGTGTGT CAGCATGTTT ATGATGCAAG GTGCGACCTG GTTACAGATG AAGACTGAAG GTGAGTTGAG AGTTCGTGCT GCTAAGGCCG CTCAAGTATT ATCAGCCTTG TTATTCGTCT TCTTTGGTGC AGCTGGTGTC TGGCTGGTTA ATGGCATCGA TGGTTATGTG ATCACTTCAA CCATAGATAC TTATGGCATC TCAGATCCAA CGCTTAAGAC GGTTGCCGTC GAAGCGGGGG CATGGTTGGC TAACTACGAC AAGTACCCTA TTACTATGTT GTTCCCAGTC ATTGGACTGG CTATGCCTAT CTTAGTCCTG CTGTCGAGCC GTCTAAACCG TAGTGGTTTC GCCTTCTTCT TCAGTTCACT GGCGATTGCC GCCGTGATCT TAACTTGTGG TGCGGCTATG TTCCCATTTG TTATGCCATC TTCACTCGAG CCAAACGTGA GTTTGACTAT GTGGGATGCG ACTGCAAGTG AAATGTCGCT GACTGTTATG ACTTGGGCTG CAATCATCTT CGTACCTATT GTACTTAGCT ACACTGTGTA CACTTATTTG AAGATGTTTG GTCGTCTATC TCGCAGCTTT ATCGAGAATA ACAAGACATC ACTTTACTGA
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Protein sequence | MFDYEMLRLI WWALIGVLFI GFAVTDGFDM GVGALLPIIG KDDTERRIMI NSIAPHWDGN QVWLITAGGA LFAAWPMVYG VSFSGFYVAM MLVLFALFLR PVGFDYRSKI EDPRWRKSWD WALFVGGFVP PLIIGVAFGN LLQGVPFNFD EYLRATYHGG FFGLLNPFGL LAGLVCVSMF MMQGATWLQM KTEGELRVRA AKAAQVLSAL LFVFFGAAGV WLVNGIDGYV ITSTIDTYGI SDPTLKTVAV EAGAWLANYD KYPITMLFPV IGLAMPILVL LSSRLNRSGF AFFFSSLAIA AVILTCGAAM FPFVMPSSLE PNVSLTMWDA TASEMSLTVM TWAAIIFVPI VLSYTVYTYL KMFGRLSRSF IENNKTSLY
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