| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3111 |
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| Symbol | |
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| ID | 5611696 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3749078 |
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| End bp | 3749710 |
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| Gene Length | 633 bp |
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| Protein Length | 210 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934049 |
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| Product | TetR family transcriptional regulator |
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| Protein accession | YP_001474843 |
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| Protein GI | 157376243 |
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| COG category | [K] Transcription |
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| COG ID | [COG1309] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCCG AACTCTCCTG TTTAAACTTG AGTCGTAGTG AACAAAAAAG GGCGCAGATC
CTCGAGGCTG CGATAGAGCT ATTTTGCGGG CATGGTTTTC CCAATACCAG TATGGATGAG
GTTGCCAGAA AGGCCGGCGT CTCGAAGCAA ACCGTGTATT CGCACTTCGG TTGTAAAGAT
GGCCTTTTCA TTGCTTCTAT CAAGTCTAAA TGTGTTGTCA GCCAGTTAAC CGATGAGCTG
TTTGGTGATG CCAGTGAACC GGAAAGAACA CTGACTAATT TTGGTGAATA CTTCGGCAAT
ATGATTGTGA GTCCTGAGGC GATAACCGTG TTTACTGCTT GTGTTGCACA AGCCGAAACA
CATCCTGAAA TTTCTGCGCT GTTTTTCGAT GCCGGTCCAC AGCATCTGCT CGATATGTTA
TCTGGTTATC TGGAAGAGGT GGGTAAGCAG GGTTTATACC GTTTCGACAA GCCTCGTGAT
TGTGCGGTCC GACTCTGTTT GATGATGTTT GGTGAGATGC GAATGAAGCT GGAGCTGGGA
CTTCCTATTG ACGATTTAAT TGAAGGACGC TCTGGTTACA CTCAAGAGTG TGTGGCAATG
TTTTTAAGGG CTTATAGGGT TGCTAACTTT TAA
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| Protein sequence | MTAELSCLNL SRSEQKRAQI LEAAIELFCG HGFPNTSMDE VARKAGVSKQ TVYSHFGCKD
GLFIASIKSK CVVSQLTDEL FGDASEPERT LTNFGEYFGN MIVSPEAITV FTACVAQAET
HPEISALFFD AGPQHLLDML SGYLEEVGKQ GLYRFDKPRD CAVRLCLMMF GEMRMKLELG
LPIDDLIEGR SGYTQECVAM FLRAYRVANF
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