| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3102 |
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| Symbol | |
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| ID | 5611087 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3739768 |
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| End bp | 3740826 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640934040 |
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| Product | mannose-1-phosphate guanyltransferase |
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| Protein accession | YP_001474834 |
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| Protein GI | 157376234 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis
[T] Signal transduction mechanisms |
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| COG ID | [COG1208] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)
[COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCAAA TATTGAGCAA AGTGACAATA TCACCAGAAA AGACACTCCG TGATGCTCTG
GAGTTGATTA ACTCACAAGC ATTACAAGTC GCATTAGTCA CCGATCACGA CAAGCACCTT
TTAGGTGTTA TCACTGATGG TGATATTCGT CGCGGTCTAC TCAATAACCT GTCACTCGAT
GCACTCGTGA CTGAAGTAAT GAACAGGAAC CCCAGAACAG CTTCTCCTTC AACGTCTAAG
AAGAAACTGC TTCAACTCAT GCAACAGCAC AGTATATTAT CTATCCCACT CGTTAAAGAC
CATATTCTTG TGGGACTCGA AACCTTAAAG AGTGCCCAAC AACAAACTAA TCATGCAAAC
CCAGTACTTA TCATGGCTGG AGGCTTTGGT ACGCGCCTAA AACCTCTTAC AGATAAGTGC
CCTAAGCCTA TGCTCAAGGT TGGAAACAAG CCAATACTGG AAATTGCGCT GTTTAACTTT
ATCCAAGCGG GCTTCTCAAA TTTCTATATC TCTACCCATT ATATGCCTGA GCAGATAAAG
GAGCATTTCG GCGATGGCAG CCAATGGAAC GTGAAGATAT CCTATCTTCA TGAAGAGACT
CCCTTAGGTA CAGGTGGAGC GGTAGGGCTA CTGCCAACCG ATATTCCCCA GTTACCCGCG
ATAGTCATGA ACGGCGATAT TTTAACTAAA GTGGATTTTC AACTTTTACT CAAATTCCAT
GAGGATAATG ATGCCGACGC CACCATGTGT GTCAGAGAAT ATGACTATCA AATCCCCTAC
GGCGTGATCA GTGGTAGTGG AAATCGCATC ACAGATATGG TCGAAAAGCC TGTACAACGC
TTTTTTGTCA ATGCGGGGAT TTATGTTATC AACCAAGATA TTATAAAAAG TGTTTCCGCT
AACACCTATA TTGATATGCC AACACTTCTT GAACAGAAAA TAGCAGATAA GGGGGAAGTT
CTTATGTTCC CACTCCATGA ATACTGGCTC GATATTGGCC GTATGGATGA CTTTAAACAA
GCCCAGGTTG ATATCTGCGC CTTTGGTTTA GAACGATGA
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| Protein sequence | MSQILSKVTI SPEKTLRDAL ELINSQALQV ALVTDHDKHL LGVITDGDIR RGLLNNLSLD
ALVTEVMNRN PRTASPSTSK KKLLQLMQQH SILSIPLVKD HILVGLETLK SAQQQTNHAN
PVLIMAGGFG TRLKPLTDKC PKPMLKVGNK PILEIALFNF IQAGFSNFYI STHYMPEQIK
EHFGDGSQWN VKISYLHEET PLGTGGAVGL LPTDIPQLPA IVMNGDILTK VDFQLLLKFH
EDNDADATMC VREYDYQIPY GVISGSGNRI TDMVEKPVQR FFVNAGIYVI NQDIIKSVSA
NTYIDMPTLL EQKIADKGEV LMFPLHEYWL DIGRMDDFKQ AQVDICAFGL ER
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