Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3078 |
Symbol | |
ID | 5611626 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3714898 |
End bp | 3716814 |
Gene Length | 1917 bp |
Protein Length | 638 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640934015 |
Product | flagellar hook-associated protein FlgK |
Protein accession | YP_001474810 |
Protein GI | 157376210 |
COG category | [N] Cell motility |
COG ID | [COG1256] Flagellar hook-associated protein |
TIGRFAM ID | [TIGR02492] flagellar hook-associated protein FlgK |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGATGA ATCTTCTTAA TATTGCCCGT ACCGGGGTTT TAGCTTCGCA ATCACAACTG GCGGTGACCA GTAATAACAT TGCTAATGCC AATACTCAGG GGTATCACAG GCAGGTTGCC GAGCAGTCTA GTCTCGAATC ACAACGTGCG GGGAGTGAGT TCTATGGTTC CGGAACTTAT ATCTCAGACG TAAAGCGTAT CTACAACGAC TATGCCGCGC GTGAACTACG CATCGGACAG ACGAGTGCCA GTGAAGCCCA AACGACACAT ACCAAGATGA GTGAGCTCGA TCAGCTCTTC TCTCAGATCG GCAAGGCGGT GCCACAAGGA CTCAATGATT TCTTCGCCGG CCTTAACAGC CTGTCAGATC TTCCCGATGA TATAGGCATA AGGGGAAGCG TACTGGGCTC TGCCGGACAA CTGGCCACAA GCCTTAATCA GATGCAGTCT CATCTCGATG GTCAGATGAA GCAGACCAAT GATCAGATCG TCGGCATTAC CGACCGAATC AATGAGATCA GTAAAGAGCT TGGCCATATC AATCAGGAGT TGATGAAGTC TCAGGGTGAG GATGCGCAGC TTCTCGATAA ACAAGATGCG TTGATCCAAG AGTTGAGCCA ATACTCAGAA GTTAACGTCA TCCCGCTCGA TACGGGGGCC AAGAGTGTCA TGCTGGGCGG AGCTGTGATG TTGGTTTCCG GCGAAGTTTC TATGGCAATT GGCACTACAC CCGGAGACCC TTTCGGCAGA GAGTCACAAA TTACCGCCTC GATAGGAACT CACAGCCAAG TTATCGATGG TTCAAAACTG GGTGGACAGA TTGGCGCGCT ATTCGAGTTT CGTGACGAGA CATTAGTCAA GGCGCAGCAG GAGCTTGGTC AACTATCTCT GGGGGTTGCC GATGCATTTA ACCAAGCCCA GAAAGAGGGT TTCGATCTAA ACGGCGAAGT GGGCAAAGAT ATCTTTAAAG ACATTAACGA TCCCACTATG TCTGTCGGAA GAGTCGGAGC GTTAAGCTCA AATACAGGTA CTGCGTCGCT TCGGGTCAAT ATCGATGACT CGGGACAGTT ATCTGGTAAT AGTTACGAGC TATCTTACAC CGCTCCGGCA ACTTATGAAC TCACAGATAC CTTAACCGGC AATGTCACAC CGTTGACGCT AAACGGTACC CAGCTTGATG GCGCCGGCGG CTTCACTATT CATATCGACT CCGGCGCATT GGCAGATGGG GACAAATTTG AAATAAGACC CGCTGCAGGG GCCGCCGCAG GGATCGGTGT AGTGATGACA GATCCTGAAG GTATTGCCGC TGCTGCACCT AAGATTACTC CCGATGCGGC AAACTCCGGT AATACCGAAA TAGAGATGGT GAGTATCGAT AACAGAGGAG CTGCGGGATT CCCTCTCACG GGCTCTGAAC TCACTTTCGA AATTAATACA GCCGCGAATA CGTTCGAAGT TTTCGATGCT ACCGGTGCCT CTCTTGGTGC GGCGGCAGCA TTTGTTCCAC CTTCAATTAG CGCCTATGGC TTTACCTTCG ATGTGACATC GACGGCGGCG GCAACGGACA GGTTTACTTT CGACCTCTCA TTTGCTCCGG GCGACAACAC CAACTCGGTG GCCATGTCTA AATTGAGTGA AACTAAATTG ATGAACGGCG GCACATCGAC GCTGACTGAT GTTTATGAAG GTACCAAGTT GAGTGTTGGT GGAAAAACAA AGGCCGCCGA AGTTGCTATG GGCTCTGCTC AAGCTGTTTA TTCTCAGGCG TACAGCAGAG TGCAGAGTGA GTCTGGTGTC AACATAGATG AAGAGGCGGC CAATTTACTC CGCTTTCAAC AAGCCTATCA GGCATCGGCT CGGATTATGA CGACGGCTTC TGAAATTTTC GACACGCTAT TTAACTCGAC TCGATAG
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Protein sequence | MSMNLLNIAR TGVLASQSQL AVTSNNIANA NTQGYHRQVA EQSSLESQRA GSEFYGSGTY ISDVKRIYND YAARELRIGQ TSASEAQTTH TKMSELDQLF SQIGKAVPQG LNDFFAGLNS LSDLPDDIGI RGSVLGSAGQ LATSLNQMQS HLDGQMKQTN DQIVGITDRI NEISKELGHI NQELMKSQGE DAQLLDKQDA LIQELSQYSE VNVIPLDTGA KSVMLGGAVM LVSGEVSMAI GTTPGDPFGR ESQITASIGT HSQVIDGSKL GGQIGALFEF RDETLVKAQQ ELGQLSLGVA DAFNQAQKEG FDLNGEVGKD IFKDINDPTM SVGRVGALSS NTGTASLRVN IDDSGQLSGN SYELSYTAPA TYELTDTLTG NVTPLTLNGT QLDGAGGFTI HIDSGALADG DKFEIRPAAG AAAGIGVVMT DPEGIAAAAP KITPDAANSG NTEIEMVSID NRGAAGFPLT GSELTFEINT AANTFEVFDA TGASLGAAAA FVPPSISAYG FTFDVTSTAA ATDRFTFDLS FAPGDNTNSV AMSKLSETKL MNGGTSTLTD VYEGTKLSVG GKTKAAEVAM GSAQAVYSQA YSRVQSESGV NIDEEAANLL RFQQAYQASA RIMTTASEIF DTLFNSTR
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