Gene Ssed_3078 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3078 
Symbol 
ID5611626 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3714898 
End bp3716814 
Gene Length1917 bp 
Protein Length638 aa 
Translation table11 
GC content50% 
IMG OID640934015 
Productflagellar hook-associated protein FlgK 
Protein accessionYP_001474810 
Protein GI157376210 
COG category[N] Cell motility 
COG ID[COG1256] Flagellar hook-associated protein 
TIGRFAM ID[TIGR02492] flagellar hook-associated protein FlgK 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGATGA ATCTTCTTAA TATTGCCCGT ACCGGGGTTT TAGCTTCGCA ATCACAACTG 
GCGGTGACCA GTAATAACAT TGCTAATGCC AATACTCAGG GGTATCACAG GCAGGTTGCC
GAGCAGTCTA GTCTCGAATC ACAACGTGCG GGGAGTGAGT TCTATGGTTC CGGAACTTAT
ATCTCAGACG TAAAGCGTAT CTACAACGAC TATGCCGCGC GTGAACTACG CATCGGACAG
ACGAGTGCCA GTGAAGCCCA AACGACACAT ACCAAGATGA GTGAGCTCGA TCAGCTCTTC
TCTCAGATCG GCAAGGCGGT GCCACAAGGA CTCAATGATT TCTTCGCCGG CCTTAACAGC
CTGTCAGATC TTCCCGATGA TATAGGCATA AGGGGAAGCG TACTGGGCTC TGCCGGACAA
CTGGCCACAA GCCTTAATCA GATGCAGTCT CATCTCGATG GTCAGATGAA GCAGACCAAT
GATCAGATCG TCGGCATTAC CGACCGAATC AATGAGATCA GTAAAGAGCT TGGCCATATC
AATCAGGAGT TGATGAAGTC TCAGGGTGAG GATGCGCAGC TTCTCGATAA ACAAGATGCG
TTGATCCAAG AGTTGAGCCA ATACTCAGAA GTTAACGTCA TCCCGCTCGA TACGGGGGCC
AAGAGTGTCA TGCTGGGCGG AGCTGTGATG TTGGTTTCCG GCGAAGTTTC TATGGCAATT
GGCACTACAC CCGGAGACCC TTTCGGCAGA GAGTCACAAA TTACCGCCTC GATAGGAACT
CACAGCCAAG TTATCGATGG TTCAAAACTG GGTGGACAGA TTGGCGCGCT ATTCGAGTTT
CGTGACGAGA CATTAGTCAA GGCGCAGCAG GAGCTTGGTC AACTATCTCT GGGGGTTGCC
GATGCATTTA ACCAAGCCCA GAAAGAGGGT TTCGATCTAA ACGGCGAAGT GGGCAAAGAT
ATCTTTAAAG ACATTAACGA TCCCACTATG TCTGTCGGAA GAGTCGGAGC GTTAAGCTCA
AATACAGGTA CTGCGTCGCT TCGGGTCAAT ATCGATGACT CGGGACAGTT ATCTGGTAAT
AGTTACGAGC TATCTTACAC CGCTCCGGCA ACTTATGAAC TCACAGATAC CTTAACCGGC
AATGTCACAC CGTTGACGCT AAACGGTACC CAGCTTGATG GCGCCGGCGG CTTCACTATT
CATATCGACT CCGGCGCATT GGCAGATGGG GACAAATTTG AAATAAGACC CGCTGCAGGG
GCCGCCGCAG GGATCGGTGT AGTGATGACA GATCCTGAAG GTATTGCCGC TGCTGCACCT
AAGATTACTC CCGATGCGGC AAACTCCGGT AATACCGAAA TAGAGATGGT GAGTATCGAT
AACAGAGGAG CTGCGGGATT CCCTCTCACG GGCTCTGAAC TCACTTTCGA AATTAATACA
GCCGCGAATA CGTTCGAAGT TTTCGATGCT ACCGGTGCCT CTCTTGGTGC GGCGGCAGCA
TTTGTTCCAC CTTCAATTAG CGCCTATGGC TTTACCTTCG ATGTGACATC GACGGCGGCG
GCAACGGACA GGTTTACTTT CGACCTCTCA TTTGCTCCGG GCGACAACAC CAACTCGGTG
GCCATGTCTA AATTGAGTGA AACTAAATTG ATGAACGGCG GCACATCGAC GCTGACTGAT
GTTTATGAAG GTACCAAGTT GAGTGTTGGT GGAAAAACAA AGGCCGCCGA AGTTGCTATG
GGCTCTGCTC AAGCTGTTTA TTCTCAGGCG TACAGCAGAG TGCAGAGTGA GTCTGGTGTC
AACATAGATG AAGAGGCGGC CAATTTACTC CGCTTTCAAC AAGCCTATCA GGCATCGGCT
CGGATTATGA CGACGGCTTC TGAAATTTTC GACACGCTAT TTAACTCGAC TCGATAG
 
Protein sequence
MSMNLLNIAR TGVLASQSQL AVTSNNIANA NTQGYHRQVA EQSSLESQRA GSEFYGSGTY 
ISDVKRIYND YAARELRIGQ TSASEAQTTH TKMSELDQLF SQIGKAVPQG LNDFFAGLNS
LSDLPDDIGI RGSVLGSAGQ LATSLNQMQS HLDGQMKQTN DQIVGITDRI NEISKELGHI
NQELMKSQGE DAQLLDKQDA LIQELSQYSE VNVIPLDTGA KSVMLGGAVM LVSGEVSMAI
GTTPGDPFGR ESQITASIGT HSQVIDGSKL GGQIGALFEF RDETLVKAQQ ELGQLSLGVA
DAFNQAQKEG FDLNGEVGKD IFKDINDPTM SVGRVGALSS NTGTASLRVN IDDSGQLSGN
SYELSYTAPA TYELTDTLTG NVTPLTLNGT QLDGAGGFTI HIDSGALADG DKFEIRPAAG
AAAGIGVVMT DPEGIAAAAP KITPDAANSG NTEIEMVSID NRGAAGFPLT GSELTFEINT
AANTFEVFDA TGASLGAAAA FVPPSISAYG FTFDVTSTAA ATDRFTFDLS FAPGDNTNSV
AMSKLSETKL MNGGTSTLTD VYEGTKLSVG GKTKAAEVAM GSAQAVYSQA YSRVQSESGV
NIDEEAANLL RFQQAYQASA RIMTTASEIF DTLFNSTR