| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3073 |
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| Symbol | |
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| ID | 5611940 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3709776 |
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| End bp | 3711149 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640934010 |
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| Product | flagellar hook-associated 2 domain-containing protein |
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| Protein accession | YP_001474805 |
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| Protein GI | 157376205 |
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| COG category | [N] Cell motility |
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| COG ID | [COG1345] Flagellar capping protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCATTAA CGGCAACGGG AATAGGTTCA GGGCTCGATA TTAACACTAT TGTCGGTGTT
CTTGTTGATG CAGAGAAAAT CCCGAAAGAA GCAATGTTCG ATAAAACTGA AAAGACGATC
GATGCAAAAG TATCGGCGAT AGGCACATTA AAGAGCGCCT TATCGACATT TCAGGATGCA
CTGGAAAAGC TTCAGGATGG TGGTAGTTTA AACCAGAGAA CCGTTTCTAC CGGTGAGAGT
AGCTATCTGA CAGCAACTGC AGATAAGACG TCACAATCCG GCAGTTATAA TGTGAAGGTT
GAGCAATTAG CTCAGCAGCA TAAGGTTGCC GGCATCAATG TTGCCGACCC AAGCTTACCT
GTTGGGGAAG GAAGTCTAGA TCTGACGGTA AACGGTGAGA ACTTTTCCGT GACTGTCGGT
GCGACCGATT CACTCGAAGA TATCGCTAAA AATATCAATA GTGCAACCGA TAATGTCGGC
GTTACGGCGA CAATTATTAC CAGTGATGCA GGTAGCAGGC TGGTATTAAG TTCTGATACC
GAAGGTACTG ATAGCCAGAT AAGCGTGGTA GCAAACGACA CTGTGGGTAC CGGTCTGAAT
GATATGTTCG GCGGGGCTAA CCTTACTGAG CTACAAGTTG CTAAAAATTC GATAGTTCAT
GTAGATGGTC AGCAACTGAC TTCACAGACC AATGAAGTTA AAGGCGCGAT TACCGGCGTT
ACTCTGAGCC TTACAGATGC CGACTTGAAT GAAACAACGG TGGTTAAGGT TGAGCTGGAT
AAAGACGCCG TTAAAGATAA TGTGCAAGGC TTTGTCGATG CATATAACAG CTTAATCGAC
ACGGTGGATA AGCTATCGTC CTATGATGCT GATAAAAAAG AGGCCGCTGC GCTGCAGGGA
GACTCTATGA TCCGCTCAAT TGAATCTCAA TTGCGGAGTA TGATCAGTTC AAGGGTCGAT
GTCGGAGGCG AGACTGTAGC GCTCTATGAT ATCGGCATCG AAGCAGACCG TTATGGAAAG
TTATCTGTAG ATAGTGACAA GCTTGATACC GCGATTGAAG AGAATATGAC GGGTATAGAA
GGCCTGTTTT CGACAAAAGA TACCGGTCTT GCAAACCGTT TGGACACCTT GGTTGAAAGT
TATGTAAAAC CGACGACAGG TTTGATTGAC AGCAGAAACA ACGCTTATAC CAGTGATAAA
CAACGTCTGG ATGATCAACG TGAGGCCTTT ACTCTTAAGA TGGAGCAGCT CGAGGCCAGA
TTGATGAAGC AGTTTAATGC GATGGATTTG ATTGTCGGTA ACTTAAACCA GCAGTCTGCC
GGGATTGTTG GTGGCTTAAA CTCACTGCCT GGTGTGGTTA GAAGTCAAAG TTAA
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| Protein sequence | MALTATGIGS GLDINTIVGV LVDAEKIPKE AMFDKTEKTI DAKVSAIGTL KSALSTFQDA
LEKLQDGGSL NQRTVSTGES SYLTATADKT SQSGSYNVKV EQLAQQHKVA GINVADPSLP
VGEGSLDLTV NGENFSVTVG ATDSLEDIAK NINSATDNVG VTATIITSDA GSRLVLSSDT
EGTDSQISVV ANDTVGTGLN DMFGGANLTE LQVAKNSIVH VDGQQLTSQT NEVKGAITGV
TLSLTDADLN ETTVVKVELD KDAVKDNVQG FVDAYNSLID TVDKLSSYDA DKKEAAALQG
DSMIRSIESQ LRSMISSRVD VGGETVALYD IGIEADRYGK LSVDSDKLDT AIEENMTGIE
GLFSTKDTGL ANRLDTLVES YVKPTTGLID SRNNAYTSDK QRLDDQREAF TLKMEQLEAR
LMKQFNAMDL IVGNLNQQSA GIVGGLNSLP GVVRSQS
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