| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3070 |
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| Symbol | |
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| ID | 5611798 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3707277 |
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| End bp | 3708710 |
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| Gene Length | 1434 bp |
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| Protein Length | 477 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934007 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_001474802 |
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| Protein GI | 157376202 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGCAAA CAGATCAACG AATTCTACTT GTCGGTAACC AGTCAGAGCG AATTAATCGC
TTGTCGTGCG TATTTGAGTT TTTGGGTGAG CAAGTTGAGC TAGTCGCAGT CGATAAGCTT
GAGCTGCGAA TTCAAAACAC TCGATTCAGA GCCTTGGTTA TTTCAGCCGA AACTCAATCT
AAAGAGTTAC TTAAATCTCT TGCCGGGACA TTACCCTGGC AGCCTATATT GTTGCTCGGA
GACTTAACGG GCGTTACAGC ATCTAATATT TTGGGTCATA TTGAGGAACC CCTCAATTAT
CCTCAGTTGA CCGAGCTGCT ACATTTCTGT CAGGTCTTCG GCCAGGCTAA ACGTCCGGAT
ATTCCCACCA GTGTCAATCA GACTAAGTTA TTCAGGAGTA TGGTTGGGCG AAGTGATGGT
ATTGCTCAGG TTCGTCACTT AATTAGTCAA GTTGCCAGCT CTGATGCTAC GGTATTGGTG
TTAGGTCAGT CCGGTACAGG TAAAGAGGTG GTAGCCCGTA ATATCCACTA CATATCTGAA
CGTCGCGATG GCCCATTTAT CCCGGTCAAT TGTGGCGCAA TTCCTGCGGA GCTTCTGGAA
AGTGAGTTGT TCGGTCATGA GAAGGGATCG TTTACCGGTG CGATTAGTGC CCGTAAAGGA
CGCTTCGAAT TAGCAGAGAA AGGCACTCTC TTCCTGGATG AGATCGGTGA TATGCCTCTG
CAGATGCAAG TGAAACTCTT GCGTGTGTTA CAGGAGAAGG TATTTGAACG GGTAGGGGGT
TCAAAGTCAA TTACTACCGA CGTTCGTGTT GTCGCTGCGA CTCATAGAGA TCTGGAAGAT
ATGATCACTA ACGGTGAGTT TCGTGAAGAT CTCTATTATC GATTAAATGT TTTCCCTATC
GAAATGCCTG CCCTGTGCGA GAGAAAAGAT GATATACCTC TCTTGCTTCA GGAGTTAGTC
AGTCGTGTTT ATAACGAAGG GCGTGGTAAG GTTCGTTTTA CCCAAAGAGC GATAGAGTCT
CTGAAGGAGC ACGCCTGGTC AGGTAACGTA AGAGAACTCT CGAATTTAGT TGAGCGCCTT
ACTATTCTTT ACCCAGGCGG CTTGGTCGAT GTTAATGATC TTCCTGTTAA ATATCGTCAC
ATAGATGTAC CTGAATATTG TGTCGAGGTG AGTGAAGAGG AGCTAGAGCG TGATGCGTTG
GCTTCGATAT TCAGTAATGA TGAACCGGTC GATATTCCTG AAACACGTTT TCCAAGCGAG
CTACCCCCGG AAGGCGTTAA TCTCAAAGAC CTTCTCGCTG AGCTTGAGAT AGATATGATT
AGGCAAGCGT TAGAACAACA AGATAATGTC GTTGCCAGAG CGGCTGAAAT GTTAGGTATC
AGACGCACGA CTCTCGTCGA AAAGATGAGA AAATATGGCA TGGGTAAAGA TTGA
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| Protein sequence | MMQTDQRILL VGNQSERINR LSCVFEFLGE QVELVAVDKL ELRIQNTRFR ALVISAETQS
KELLKSLAGT LPWQPILLLG DLTGVTASNI LGHIEEPLNY PQLTELLHFC QVFGQAKRPD
IPTSVNQTKL FRSMVGRSDG IAQVRHLISQ VASSDATVLV LGQSGTGKEV VARNIHYISE
RRDGPFIPVN CGAIPAELLE SELFGHEKGS FTGAISARKG RFELAEKGTL FLDEIGDMPL
QMQVKLLRVL QEKVFERVGG SKSITTDVRV VAATHRDLED MITNGEFRED LYYRLNVFPI
EMPALCERKD DIPLLLQELV SRVYNEGRGK VRFTQRAIES LKEHAWSGNV RELSNLVERL
TILYPGGLVD VNDLPVKYRH IDVPEYCVEV SEEELERDAL ASIFSNDEPV DIPETRFPSE
LPPEGVNLKD LLAELEIDMI RQALEQQDNV VARAAEMLGI RRTTLVEKMR KYGMGKD
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