| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3069 |
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| Symbol | |
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| ID | 5611797 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3705867 |
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| End bp | 3706982 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934006 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_001474801 |
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| Protein GI | 157376201 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGTAA GTCCTCAGAT TCAACTTGAT ACATTAAATC AGCACTCGCC TCGATGGTTG
GAAACAGCAC CTGCTGCCAA TATGTCCAAT CGAATGGAAC GCATCCTTCA GGCTATGCCT
TCCGGAGTCG TGATCATTAA TGGTGATGGA TTAGTCACGG ATGCTAATCC AGTGGCCGTT
GAACTCTTGG GGTTACCATT AGAGGGCTTA AGGTGGATTC AGGTCATTAA CCGTGCCTTT
TCTCCACAAG ATGACGATGG TCATGAAGTT TCACTTCGCA ATGGTCGCAG AGTTAAGCTC
GCGATAACCC CGTTGACGCC AGAACCAGGC CAGCTAATAG TACTGACTGA TCTGACTGAA
ACCCGTCTGC TGCAAAAGAA TTTATCACAT CTTCAGCGCC TTTCTGCACT AGGAAAGATG
GTGGCAACTC TTGCTCATCA AGTGCGTACG CCATTGACTG CAGCCTTGCT ATACGCCTCA
AATTTAGCCA GCCCCAGAAT ATCTGAATCT GCAAGAAGCC GTTTTCAGAA GAAGCTCGTC
GATAGGCTAA ATGAGCTTGA ACATCAGGTG AACGATATGT TGCTGATGGC AAAGGGACGT
CAACAAGAGC AAGGTGAAGC TGAGACTGTC GATTCGATTA TGGGAAGTGT GCTGGCGAAT
TGCGAACCCA TTGCAAAGCA ACATTCATGT AAGCTTGAAT TTATCGATGA ATCCAGTGGT
GAGTTTCTTG CCAATGCCAG CGCATTAAGC TCGGCTATCA ATAACCTTGT GGTTAACAGC
ATAGAAGCGG GCGCGACCCG GGTCGAGCTG AAAGGGCGAG AATCGGCTCA CGAACTTCAG
ATCGACGTCA CCGACAATGG CAAAGGCTTA GATAAGGCGA TGCAGAAGAA AGTGATGGAA
CCTTTTTTTA CGACTAAACC ACAGGGAACA GGGCTTGGTC TTGCTGTTGT TCAGTCGGTG
GTGGCTAATC ATGGCGGAAA GATTGATTTT AGGTGCGAGA AAGGAATGGG TTGCAGAGCT
TCCTTACACT TTCCCAAGTT ACAACAAATG ACAGATAAAG AAGATCTTTT ACAGGAAGGT
TTATCTAAAC AAGCTGAGGA GTCATCTCAT GTCTGA
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| Protein sequence | MSVSPQIQLD TLNQHSPRWL ETAPAANMSN RMERILQAMP SGVVIINGDG LVTDANPVAV
ELLGLPLEGL RWIQVINRAF SPQDDDGHEV SLRNGRRVKL AITPLTPEPG QLIVLTDLTE
TRLLQKNLSH LQRLSALGKM VATLAHQVRT PLTAALLYAS NLASPRISES ARSRFQKKLV
DRLNELEHQV NDMLLMAKGR QQEQGEAETV DSIMGSVLAN CEPIAKQHSC KLEFIDESSG
EFLANASALS SAINNLVVNS IEAGATRVEL KGRESAHELQ IDVTDNGKGL DKAMQKKVME
PFFTTKPQGT GLGLAVVQSV VANHGGKIDF RCEKGMGCRA SLHFPKLQQM TDKEDLLQEG
LSKQAEESSH V
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