| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3066 |
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| Symbol | fliF |
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| ID | 5612014 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3702073 |
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| End bp | 3703782 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934003 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_001474798 |
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| Protein GI | 157376198 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTGTAG GTACAAATTC CACATTGGCA AGCGATGGCA TTGCAGGTGG TGTACAAGAA
GAAAACAAGT CTGGCGGTGT TGGCTCTTTT GGTGGAGTCG ATATGTTACG ACAGGTGACC
ATGATCCTTG CACTTGCAAT CTGTCTTGCG CTTGCTGTAT TTGTCATGTT GTGGGCACAG
GAACCCGAAT ACAGACCTTT GGGTAAAATG TCTACTCAAG AGATGATCCA AGTTTTGGAT
GTACTCGATA AGAATAAGAT CAAGTATGAG ATAGATGTCG ATGTGGTGAA GGTACCCGAA
GACAAGTATC AAGATGTAAA GTTGATGCTG ACTCGCGAAG GTGTTGATAG CGCAGCCAGT
AGCAGCGATT ACCTGAGCCA AGACAGCGGG TTTGGCGTCA GCCAAAGAAT GGAGCAAGCC
AGACTCAAAC ATAGCCAAGA GTTAAACTTG GCCAGAGCCA TCGAAGAATT AAGAAACGTG
ACCCGCGCAA AAGTGATTTT AGCGATTCCT AAAGAGAATG TTTTTGCACG TAATCGCTCT
AAGCCAAGTG CTACGGTTGT GATCAATGCT CGTCGTGGAA GTCTTGGTCA GGAAGAAGTT
GATTCAATTG TTGATATTGT GGCATCTGCA GTTCAAGGAC TAGAGCCCAC ACGTGTGACT
GTGACAGACT CTAATGGCAG ATTACTTAAC TCCGGCAGTC AGGATGCGGT CTCGGCTCGA
GCTCGCCGCG AGCAAGAGTT GGTTCAACAA AAAGAGTCAG AATATCGAAA CAAAGTAGAA
TCGATACTGA TGCCAATCTT GGGGCCAGAG AACTTTACCT CTCAAGTCGA TGTTAGCATG
GACTTTACTT CCGTTGAGCA GACGGCTAAG CGATATAACC CTGATCTGCC AGCGCTTCGT
AGTGAGATGA CAGTCGAGAA TAATTCGAAC GGTGCAACCA CGGGGGGCAT TCCAGGAGCC
TTGTCTAACC AACCCCCTAT GGAAGCCAAT ATTCCACAAG AGGCGTTAAA TAATCAGGCC
GACGCCGAGT CTAATTCATC TTCTGGCTCA TCTCATAGGG AAGCGACGAG AAACTTCGAA
CTCGATACGA CTATCAGCCA TACAAGACAG CAGATTGGTG TGGTGAGACG AGTCAGTGTA
TCTGTCGCCG TCGATTTTAA ATCCGGCAGT GCCGGCGAAG ATGGTCAAGT CAGTCGTGTG
CCAAGAACCG AACAGGAATT ATCAAATATC CGTCGCCTGC TCGAAGGTGC GGTGGGCTTC
ACTACCCAGC GTGGTGACAT AATCGAAGTC GTTACCGTTC CCTTCATGGA TCAGCTGATT
GAAGACGTCC CCGCCCCCGA ATTGTGGGAG CAACCCTGGT TTTGGCGTGC AATTAAGTTA
GCCCTGGGTG GCATTGTTAT CTTGGTGCTT ATTCTTGCGG TTGTCAGACC TATGTTAAAA
CGACTCATCT ATCCCGATAG TGTTAAATTG CCTGATGAGC CTAGATTTGG TGATGAACTG
GCCGAGATTG AAGATCAATA TGCTTCAGAT ACATTAGGTA TGTTGAACAG ACCAGAAGCA
GAATACAGTT ACGCCGACGA TGGTTCAATT TTGATACCAG ATCTTCACAA AGATGATGAT
ATGATTAAAG CAATTAGGGC ACTGGTAGCA AATGAGCCTG AACTGTCGAC ACAAGTCGTA
AAGGGTTGGT TACAAGACAA TGAGCAATGA
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| Protein sequence | MVVGTNSTLA SDGIAGGVQE ENKSGGVGSF GGVDMLRQVT MILALAICLA LAVFVMLWAQ
EPEYRPLGKM STQEMIQVLD VLDKNKIKYE IDVDVVKVPE DKYQDVKLML TREGVDSAAS
SSDYLSQDSG FGVSQRMEQA RLKHSQELNL ARAIEELRNV TRAKVILAIP KENVFARNRS
KPSATVVINA RRGSLGQEEV DSIVDIVASA VQGLEPTRVT VTDSNGRLLN SGSQDAVSAR
ARREQELVQQ KESEYRNKVE SILMPILGPE NFTSQVDVSM DFTSVEQTAK RYNPDLPALR
SEMTVENNSN GATTGGIPGA LSNQPPMEAN IPQEALNNQA DAESNSSSGS SHREATRNFE
LDTTISHTRQ QIGVVRRVSV SVAVDFKSGS AGEDGQVSRV PRTEQELSNI RRLLEGAVGF
TTQRGDIIEV VTVPFMDQLI EDVPAPELWE QPWFWRAIKL ALGGIVILVL ILAVVRPMLK
RLIYPDSVKL PDEPRFGDEL AEIEDQYASD TLGMLNRPEA EYSYADDGSI LIPDLHKDDD
MIKAIRALVA NEPELSTQVV KGWLQDNEQ
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