| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3061 |
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| Symbol | |
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| ID | 5612260 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3696068 |
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| End bp | 3697897 |
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| Gene Length | 1830 bp |
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| Protein Length | 609 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933998 |
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| Product | flagellar hook-length control protein |
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| Protein accession | YP_001474793 |
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| Protein GI | 157376193 |
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| COG category | [N] Cell motility |
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| COG ID | [COG3144] Flagellar hook-length control protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.15551 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0461289 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGAAAA TGACAAATGT ACTTTTACCT AATGCTGAGA TAACTGCTGA GAGTAACGCC
TCTGCCGGCA TTAAGAAAAG TGCCCATTCA GAAAGTCGAC TATCTGAACC CCAATCCTCT
GAAACTAAAT CCTCTGAAAA GAATGACTTT TATGCTGCGC TGGAGCAGGC AAGTAATCAA
GTCGATAAGT CCTCTGCAAA ATCGAATAAG ACAAAAGAGA TGCATATCGA TGCTCTTGGT
AATGAGGACA AGCCTTCACT GAGCAAGGAG CAGCTTGATG CTGCTGAAGG GGATACCACC
GATGTAGATC ATGTATTAGG TCAGCTGACC CTTGCCAGCG AGCTTGATAA TACCGATAGC
TTGGGCTTTA GCGGTAAACT CTTGCCGCTC AATGCCGATC CGGCATCTAA TTCTCAGTCA
CAAGAGTCAG AGCTTGCCTT TAACTTCAAT AAGTTTGGAA ATAATACAAC TCAGGAGTCA
GAGCTGACGA CCGAGCTTGT CCAGGGGGAG TCACAGGAGT CAGAACTCGC CCTTAAAACT
GGTGGCACAG ATGAAACCGG CCTCGAGTCC ACCGATACTA TCGGTCAGGA GATGATGGAA
CTGCTGATGG CTAAAACGGG ATTGTCAAAA GAGGAGTTGC AGGCCCTGCC TGCTGAAAAA
TTAACAGAGC TGGCAGCATT AGCTAAAGCC GGTGCGACGA ATTTTCAACA AGTTCTCGAT
GGCAATGTCA CCGGGGCTTC GAGCCAAGCA TCATTGACTA GCTCAGGCAA TGTACAAGGG
ACTGGCAATG TTCAGGGCGC TGCCAATGTC AAGGGAGCTA CAGCGGGAAG TCCTGCCAGT
GAAGGGGCAT CATTAGATAG AAATGCAAGC TCCGTTGCTA TGGGAGCCAA TGGGCTAAGT
CAAGCAGGTA TAAATGAAGC GGGAGCTGAG TTCAAGGGGA ATCAGGCTGT AAAATCCGAC
CCATTAACGG CTTTAAATGG TGGTGCTCAA TCCAGCGCCC CTAAAGAGGG GGAGCTAAAA
CTAAGTGGTG TAAATCTTGG CGATACTAAG CCAGTTGAAG CTAAGTCAGT CGAAGTTAAG
CCGATTGAAC TCAAGTCTAA CGATGCTAAG TTGAGTAATA TCCTCGGCGA AAAGTCCATT
CTCGAAGTCG ATAAAAACCT TCAGGTTAAC AACAAGAGTG CGGGACTTGC CCCAGATGCT
GCCGCGCAAC AGTTGAAAGG AGCCGAGCTC TCGGTGCAGT TAACACCGAT AAAAGGTGCA
ATGGAACTTT CGCCCGCTCA AAGTGAGCCT GTGGCAGATA TAAAGACCTT TCAGACAACA
GCGCCAACTC CGACCTCCCC GACGAGCCGA GGTGAAGTCC CTCAATTTCA GTTATCGTTG
AGACAGAATA ACGAGCAACA AAATATGATG CAGGAGATGA TCCAACGTTT CTCTCCTGTC
ATGAAACAGC AATTGATGAC TATGGTGAGC CAAGGCGTAC ATCATGCGGA GATCAGACTC
GACCCGGCAG AATTAGGACA GATGATGGTG AGGATCCAGG TTCAGGGCGA CCAGACGCAG
GTGCAATTCC AGGTGACCCA GCATCAAACG CGAGATCTGA TTGAACAGGC GATCCCCAGA
TTAAGAGATC TGCTTTCTGA ACAGGGCATG CAATTAACTG ACAGTCACGT TTCTCAGGGG
GATACAGGTC AAGGGGAGCG TGGAGAGAAT GGAAGTGATG AAAACCAAGG TCGTTATGGC
AATGAGATGG ATGAAATTGC AGCAGAAGAG TCACTATTAA GCATAAATCA GACAACAAGT
TATAGTTCAG GTATAGATTA TTATGCATAA
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| Protein sequence | MQKMTNVLLP NAEITAESNA SAGIKKSAHS ESRLSEPQSS ETKSSEKNDF YAALEQASNQ
VDKSSAKSNK TKEMHIDALG NEDKPSLSKE QLDAAEGDTT DVDHVLGQLT LASELDNTDS
LGFSGKLLPL NADPASNSQS QESELAFNFN KFGNNTTQES ELTTELVQGE SQESELALKT
GGTDETGLES TDTIGQEMME LLMAKTGLSK EELQALPAEK LTELAALAKA GATNFQQVLD
GNVTGASSQA SLTSSGNVQG TGNVQGAANV KGATAGSPAS EGASLDRNAS SVAMGANGLS
QAGINEAGAE FKGNQAVKSD PLTALNGGAQ SSAPKEGELK LSGVNLGDTK PVEAKSVEVK
PIELKSNDAK LSNILGEKSI LEVDKNLQVN NKSAGLAPDA AAQQLKGAEL SVQLTPIKGA
MELSPAQSEP VADIKTFQTT APTPTSPTSR GEVPQFQLSL RQNNEQQNMM QEMIQRFSPV
MKQQLMTMVS QGVHHAEIRL DPAELGQMMV RIQVQGDQTQ VQFQVTQHQT RDLIEQAIPR
LRDLLSEQGM QLTDSHVSQG DTGQGERGEN GSDENQGRYG NEMDEIAAEE SLLSINQTTS
YSSGIDYYA
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