| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3054 |
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| Symbol | fliR |
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| ID | 5612333 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3691614 |
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| End bp | 3692411 |
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| Gene Length | 798 bp |
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| Protein Length | 265 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933991 |
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| Product | flagellar biosynthesis protein FliR |
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| Protein accession | YP_001474786 |
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| Protein GI | 157376186 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
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| TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.649566 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.208411 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAAATTT TAATCGGCAC CATCATGGAT ACCATAGCGT CATACATGTG GCCGCTATTT
CGGGTATCGA GCATGTTGAT GGTGATGGCT GTTTTTGGGG CGAATACCAC ACCAGTCCGT
GTTCGTCTGC TCCTGTCTAT GGCGATCACA TTTGCTATTG CTCCTGTATT ACCTCCCGTA
GAAAATATTG AACTTTTCGC CTTATCTTCG GTGTTTGTGA CCGCACAGCA AATCTTAATC
GGCGTTGCCA TGGGGTTTGT CACCTTGTTG GTCATGCAGA CATTTGTGTT GACGGGACAA
ATTATCGGTA TGCAAACGAG CCTGGGTTTC GCCTCCATGG TTGACCCCTC ATCGGGTCAA
CAAACCCCGG TTATCGGTAA CTTCTTTCTA CTGCTAACGA CAATGATTTT TTTAAGTGTC
GATGGGCACT TAGTCTTGAT CAGAATGTTA GTGGTGAGTT TCGAGACGAT CCCCATCTCC
GATCAGGGGC TAAGTATTAC CAGCTATAAG CTGCTAGCCG AGTGGGGAGC CTATATGTTT
GGTGCCGCGC TCACGATGTC AATCACAGCA ATCGTGGCAC TTCTATTGAT TAACTTATCT
TTCGGTGTCA TGACCCGAGC GTCGCCTCAA CTTAACATCT TCGCGATTGG TTTTCCCGTG
ACTATGGTCA GTGGCTTGAT CATCTTATGG TTAACCCTGA CTCCGATTAT GGAGCATTTC
GGTGAGGTCT GGCGTGCCGC TCAGTTATTG CTTTGTGATG TGTTACTGCT TCAATGTAAT
GTCGATGGTC TTTTTTAA
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| Protein sequence | MEILIGTIMD TIASYMWPLF RVSSMLMVMA VFGANTTPVR VRLLLSMAIT FAIAPVLPPV
ENIELFALSS VFVTAQQILI GVAMGFVTLL VMQTFVLTGQ IIGMQTSLGF ASMVDPSSGQ
QTPVIGNFFL LLTTMIFLSV DGHLVLIRML VVSFETIPIS DQGLSITSYK LLAEWGAYMF
GAALTMSITA IVALLLINLS FGVMTRASPQ LNIFAIGFPV TMVSGLIILW LTLTPIMEHF
GEVWRAAQLL LCDVLLLQCN VDGLF
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