| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3052 |
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| Symbol | flhA |
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| ID | 5612331 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3688044 |
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| End bp | 3690146 |
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| Gene Length | 2103 bp |
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| Protein Length | 700 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640933989 |
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| Product | flagellar biosynthesis protein FlhA |
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| Protein accession | YP_001474784 |
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| Protein GI | 157376184 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1298] Flagellar biosynthesis pathway, component FlhA |
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| TIGRFAM ID | [TIGR01398] flagellar biosynthesis protein FlhA |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0382146 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGTTA AAGCAAGCCT AGGTCAATTA AAGCAAGTAA GACCCGCCAA TTTTAAAGGC
CTGGGTACAC CTCTGCTTGT TTTAGCCGCT TTGGCTATGA TCGTATTGCC GATCCCTGCA
TTCCTGCTCG ATATTCTTTT CTCTTTCAAT ATTGCCTTAG CGCTTGTTGT ATTACTGGTA
TCTATCTATA CCGACAGGCC ACTGGATTTT GCCGCTTTCC CAAGTGTATT GCTGGTTGCA
ACCCTGTTGA GGTTGGCACT TAACGTCGCC TCTACCCGAG TCGTTCTGCT CGAGGGGCAC
AATGGTGGTG ATGCGGCCGG TAAGGTGATT GAGTCTTTCG GTTCTGTGGT GATTGGCGGT
AACTATGCCG TGGGTCTGGT GGTCTTTCTC ATTCTGATCA TCATTAACTT CGCCGTAGTG
ACTAAAGGTG CCGGGCGTAT CTCAGAAGTG AGTGCCCGCT TCACCTTGGA TGCCATGCCT
GGTAAACAGA TGGCTATCGA TGCCGACTTA AATGCCGGGG TGTTAAATCA GGATCAAGCC
CGGGTTCGCC GCGCTGAGGT CACTAAAGAA GCTGATTTCT ATGGCGCGAT GGATGGTGCA
TCGAAGTTTG TAAAAGGTGA TGCGATTGCC GGTATTATGA TCATGGTGAT TAATATCTTA
GGTGGTTTCG TCATCGGTAT GGTTCAGCAT GGACTCGATT TCTCCTCTGC GGTAGAGATC
TACACCCTGC TAACCATTGG TGATGGCCTG GTGGCTCAGA TACCAGGCCT GTTGCTCTCT
ATTGCGGCTG CACTCATGGT GACACGTCAA AATGAGTCGG GTGATATGGG CCAGATGATG
ATGAGTCAGA TGTTTGACAA TCCGAAATCG ATAGCCATCG CCGCCGCAGT CCTGTTTATC
ATGGGTATCG TACCAGGGAT GCCACATGTT GCCTTTCTCA CTCTCGCTTT TGCCGTCGGC
GGCGTTGCTT TCATGATGTA TAAAAAGAAG GAAAATGAGC GCGAGAAAGC GCTGGAGTTG
GCTAAGACCT CTCCGGCTGA GAAGGCCGAT GCCGGTAAAC CAAAAGAGCT CAGTTGGGAT
GATGTTCAAC ACGTCGATAC CATTGGGCTT GAAGTGGGTT ATCGATTGAT CCCACTGGTC
GATAAAGGTC AAGGTGGAGA ACTGCTGGGC CGAATCAAAG GGGTTAGAAA GAAACTGTCT
CAGGAACTTG GCTTCCTGGT TCCTGCTGTT CATATTCGCG ATAATCTTGA CCTGTCGCCA
AATACCTATC GTATCTCTCT GATGGGAGTG GCCTCCGGGG AAGCCGAGAT CAGACACGAT
TGTGAACTGG CGATTAACCC TGGACAGGTG TATGGCAAGT TAGATGGCAT TGAAACCACC
GATCCCGCCT TTGGGCTGGA GGCGGTGTGG ATTGCCCCTG AGCTTAGAGA GCACGCACAA
ACCTTAGGGT ATACCGTTGT TGACGCTGCG ACGGTAGTGG CAACGCACTT GAGTCAGCTA
TTAACCAATA ATGCGGCTAA GTTGCTGGGC TACGAAGAGG TACAGCAGTT GATGGAGATG
TTAGGTAAGC ATTCTCCAAA GCTTGTCGAT GGATTCGTGC CAGATGTGAT GCCACTTGGC
TCTGTAGTAA AAGTGATGCA GAACTTGCTT AATGAAGGTG TTTCAATCCG GGACCTGAAG
ACCATAGTTC AGACATTACT TGAGTATGGC ACTAAGAGCG CCGATACCGA GGTACTGACG
GCCGCGGTGC GTATTGCACT GAAACGCATG ATAGTTCAAG AGATCAGCGG ACCAGAGACA
GAGATCCCTG TCATTACATT GGCGCCAGAG TTGGAACAGA TGTTGCATCA GTCTATGCAG
GCGACTGGCG GTGAAGGTCC GAATATTGAA CCTAGTCTAG CTGAACGTAT GCAGAAGTCT
TTAGAAGACG CATCACAGAG GCAGGAGATG GTTGGACAGC CGGCAATATT GCTTACATCG
GGTATGTTAC GTTCAACCTT GTCCAGGTTT GTTAAACATA CAATTCCAAA CCTAAGGGTG
ATCTCCTATC AGGAAGTGCC CGATGAGAAG CAGATTAGAA TAGTATCTGC TGTCGGTCAG
TAG
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| Protein sequence | MDVKASLGQL KQVRPANFKG LGTPLLVLAA LAMIVLPIPA FLLDILFSFN IALALVVLLV
SIYTDRPLDF AAFPSVLLVA TLLRLALNVA STRVVLLEGH NGGDAAGKVI ESFGSVVIGG
NYAVGLVVFL ILIIINFAVV TKGAGRISEV SARFTLDAMP GKQMAIDADL NAGVLNQDQA
RVRRAEVTKE ADFYGAMDGA SKFVKGDAIA GIMIMVINIL GGFVIGMVQH GLDFSSAVEI
YTLLTIGDGL VAQIPGLLLS IAAALMVTRQ NESGDMGQMM MSQMFDNPKS IAIAAAVLFI
MGIVPGMPHV AFLTLAFAVG GVAFMMYKKK ENEREKALEL AKTSPAEKAD AGKPKELSWD
DVQHVDTIGL EVGYRLIPLV DKGQGGELLG RIKGVRKKLS QELGFLVPAV HIRDNLDLSP
NTYRISLMGV ASGEAEIRHD CELAINPGQV YGKLDGIETT DPAFGLEAVW IAPELREHAQ
TLGYTVVDAA TVVATHLSQL LTNNAAKLLG YEEVQQLMEM LGKHSPKLVD GFVPDVMPLG
SVVKVMQNLL NEGVSIRDLK TIVQTLLEYG TKSADTEVLT AAVRIALKRM IVQEISGPET
EIPVITLAPE LEQMLHQSMQ ATGGEGPNIE PSLAERMQKS LEDASQRQEM VGQPAILLTS
GMLRSTLSRF VKHTIPNLRV ISYQEVPDEK QIRIVSAVGQ
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