| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3037 |
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| Symbol | |
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| ID | 5612980 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3671284 |
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| End bp | 3672249 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933974 |
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| Product | surface lipoprotein-like protein |
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| Protein accession | YP_001474769 |
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| Protein GI | 157376169 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2853] Surface lipoprotein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00746416 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGTTTA AATGGATAAT GCTGGTTATA GCAGTGTTTG GCGTTGCGCC CATTTCAGCA
TCGCAGTTAA ACAGATACGG ACAGGACGTC GAACGTGTAC ATGTCGATTC TACCGATTCC
CAAATTAGCT CTGGTCAGAC TAACTCTGAC CAGGCTAACT CAGTCCAGGC TTACTCAGAA
CAGAGCATCT CAGGCCCAAT TGACGGTTCC GATATCGCAT CTGGCATCGA AGGGATTGAT
TCCGATGTTA GCGCGTCTGA GGGTAATGCA GAGGTCACGA CCGCCGAGGT TACCGTTACC
TATATTGATC CAAGAGATCC CATCGAAGGG TTTAACCGGG CTATGTGGGA CTTTAACTAC
CTGTACCTGG ACAGGTATTT TTATCGACCA GTTGCTCATG GATATAACGA TTATGTACCA
AGACCGGTGA AGACAGGTAT CCATAATTTT GTGACTAACC TCGATGAGCC CAGCGCCTTG
GTGAACAACA CCTTGCAGGG TAAATGGGGC TGGGCGGCAA ATGCCGGTGG ACGCTTTACG
ATAAACTCGA CCATGGGGTT ACTCGGTGTA ATCGATGTCG CAGATATGAT GGGCCTGCCC
CGCAAACAAG ATGAATTCAA TGAGGTGTTA GGCTACTACG GTGTACCTAA TGGCCCATAC
TTTATGGCGC CGTTCTTAGG ACCTTATGTC ACCAGAGAGG TCGCGTCGTT CTGGGTTGAT
GGCCTATACT TTCCAATATC GGAGATAACT GTGTGGCAGT CCTTGTTAAA ATGGGGGCTT
GAGAACCTGC ATAGAAGGGC CGGAGCTATC GATCAAGAAA GACTCGTCGA TAACGCATTA
GACCCTTATA CTTTTGTTAA GGAAGCCTAT TTTCAACATA TGGACTATAA GGTGTATGAT
GGTGATGTAC CTGTCGATCT TGATGAAGAT GAGCTGTTAG ATGAGTTTAT GCAGGAATTA
GATTAA
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| Protein sequence | MKFKWIMLVI AVFGVAPISA SQLNRYGQDV ERVHVDSTDS QISSGQTNSD QANSVQAYSE
QSISGPIDGS DIASGIEGID SDVSASEGNA EVTTAEVTVT YIDPRDPIEG FNRAMWDFNY
LYLDRYFYRP VAHGYNDYVP RPVKTGIHNF VTNLDEPSAL VNNTLQGKWG WAANAGGRFT
INSTMGLLGV IDVADMMGLP RKQDEFNEVL GYYGVPNGPY FMAPFLGPYV TREVASFWVD
GLYFPISEIT VWQSLLKWGL ENLHRRAGAI DQERLVDNAL DPYTFVKEAY FQHMDYKVYD
GDVPVDLDED ELLDEFMQEL D
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