| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3029 |
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| Symbol | |
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| ID | 5613322 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3659953 |
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| End bp | 3661605 |
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| Gene Length | 1653 bp |
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| Protein Length | 550 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640933966 |
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| Product | general secretion pathway protein E |
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| Protein accession | YP_001474761 |
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| Protein GI | 157376161 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.599486 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00121357 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATATTG AAACACTACT GACGCAAGAC TTCGCCGTAT CAACAGTCGA TATTGAAAAA
GCAATTGCTT ATCAAAAACG TGCTAATGGT CGCCTTGAAA AAATTCTTGT TAATATGGGA
GCCTTGTCTG AAGAGGTACT ACCGCGCCTT TATAGCAAGC TTTTACAATT GCCCTTGGTC
GATATCAACG CTTTGCAAGA CTGGCAAGCG CCAGTTTGGG AAGAAAAAGT CGACCTTTCA
AAATTAGTTG AACATGGTTG GTACCCACTT CAGCAGACTA AAGGTGTTTG GACTATTGCG
GTTCAGGACC CACTTAACTT TGATATCATG CAACTGTTAG AGTTTTATCA AATTCAGTTT
GAACTGCAGG TACTCGATGA TGAAACGACT ACGGTATTAG TCGGTCATTA TCAAGATGCA
GAGTTACAAA CCGCTGATAA TGAACTATCT ACCGATGAAG AGGAAAGGTT AAAGGAGTTA
GCTACAGAAG CACCGACAGT TAACCTTTTA AATTCTTTGA TTGGTAGAGC ATTAAAGGCT
GGTGCTTCAG ATATGCATCT GGAACCATAC CAAGAGAAGT ATCGAATTCG ATTCCGTATC
GATGGGGTAC TGCAAGATAT CGAGATGCTC CCGGCAAAGA TGCGTCTACC TATAGCATCA
CGTCTGAAAA TTTTGTCAGG TATGGATATC GCTGAAAAGC GAAAGCCTCA AGATGGCAAA
ATCGAAATGA AGATCGCCTC TGAAGAGTTT GATATTCGAG TATCGGCCTT ACCATTGAAC
GATGGCGAGA GTATTGTGAT GCGTTTTCTG CGTAAAGAAG CCATTAAGTA CGATATGGAT
GTGCTCGGTC TATCCGGTGA TATCCGTGAG CTGATTGAGG AAGATCTTAA AACCACGGCG
GGTGTTATTC TGCTAACCGG CCCAACCGGT AGTGGTAAAA CGACAAGTTT ATATACCTTC
CTCAACTCCA TTAATAATAG TGACGTAAAA ATTATTACCC TCGAAGATCC AGTCGAGTAT
CAACTGGAAG GGGTTAACCA GGTTCAGGTT CAGTCTGAAA TCGGCTTCGA TTTCTCAGCC
GGCCTTCGAA GCATAGTCAG GCAAGATCCC GATGTGATCA TGTTAGGTGA AATTCGTGAC
TCAGAAACTG CTCAAATCGC CATGCAGTCT GCACTCACCG GACACCTGGT ATTCAGTACT
GTTCATACAA ATGATGCGGC CAGTGCCTAT ACTCGCTTAA TTGACTTGGG TGCTGAAGAG
TTTCTACTTA ATGCGGCGAT AACCTCTGTT ATTGCGCAAC GTTTGGCTCG AAAGCTGTGT
AAGCATTGTT CGCTACCTCA TCCCGATGCA GATAAAATAA TTGAAAAGTA TCAGTTAAGA
CCTTTAGCAG ATCAGTGTGG AGTCGAAATA AACCTCCATA TTCCAAATGG GTGTGAGCAC
TGTAATGAAA GTGGCTATAG CGGCCGAATT GCGATTGTTG AATACCTTCG CTGTGATGAC
GAGATAAAAA TGCTACCGAA AGATAAACAT TTTCCTATCG TTGCCCGCGA AACTGCAAAG
AAAAGGGGTT ATCGAAACTT GCTAGAAGAT GGGCTTTATA AGGCCATGAT AGGTATCACT
TCAGTAGATG AAGTGCTTCG GGTTGCCGGA TAA
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| Protein sequence | MNIETLLTQD FAVSTVDIEK AIAYQKRANG RLEKILVNMG ALSEEVLPRL YSKLLQLPLV
DINALQDWQA PVWEEKVDLS KLVEHGWYPL QQTKGVWTIA VQDPLNFDIM QLLEFYQIQF
ELQVLDDETT TVLVGHYQDA ELQTADNELS TDEEERLKEL ATEAPTVNLL NSLIGRALKA
GASDMHLEPY QEKYRIRFRI DGVLQDIEML PAKMRLPIAS RLKILSGMDI AEKRKPQDGK
IEMKIASEEF DIRVSALPLN DGESIVMRFL RKEAIKYDMD VLGLSGDIRE LIEEDLKTTA
GVILLTGPTG SGKTTSLYTF LNSINNSDVK IITLEDPVEY QLEGVNQVQV QSEIGFDFSA
GLRSIVRQDP DVIMLGEIRD SETAQIAMQS ALTGHLVFST VHTNDAASAY TRLIDLGAEE
FLLNAAITSV IAQRLARKLC KHCSLPHPDA DKIIEKYQLR PLADQCGVEI NLHIPNGCEH
CNESGYSGRI AIVEYLRCDD EIKMLPKDKH FPIVARETAK KRGYRNLLED GLYKAMIGIT
SVDEVLRVAG
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