| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3024 |
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| Symbol | |
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| ID | 5613703 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3656339 |
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| End bp | 3657232 |
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| Gene Length | 894 bp |
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| Protein Length | 297 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 640933961 |
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| Product | Type II secretory pathway component PulK-like protein |
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| Protein accession | YP_001474756 |
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| Protein GI | 157376156 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3156] Type II secretory pathway, component PulK |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000806858 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGAGCAT TAATGTCTCA CTCTAAGTCA AAAGGCATGG CACTTTTTCA AGTATTGTTG
ATCACTATGG TGATCAGTAT CTTGGCATTA CAGTTTACCC AAACAGCCAA AAACCAGATA
ATAATTGCTG CAACTATCGT CGATAGAGTA CAAGCTCAAG TCAATTTGAA AAATACTGAG
TCAGAATTAT TATTTGCCTT GTTTACTGAG GTGAGAACCG GGCAAACAAG TGATGAAAAT
CAATTAGCTC AACATTGGAA TTTTCATGGC AAACCTTTCA CTACTGACGA AAATGTGAAG
GTATCAATGC AAGACCAAAA TGGTTTGATT AGCCTCTATA AAGGAAGACC TCAAAAGTTA
TTGGAATCAA TGATAAACTA TCTGGGAGTT GAAAATGTAT CAGCTTCTGT TGCGAGTAAT
AGTTTAATTG ATTGGCAAGA TGGGGATGAT TTAATAAGAG CTAATGGAGC TGAAGCGAGT
TACTATGGGG CTCCGGGCAT GCCCACGAAT ATGCCATTAC AAACTTATTC TGAAACACAG
AACATTCGTG GTTTTACTCC TGAATTAGTC GAGGCTCTGG CGCCGTATGT CACTATTCGA
CCACAAACTT ATTTCAACCC TATGACTGCA CCAAAAGAGA TTTTAGCTAT AGTTGTCGGC
GCTGATAAGG CTAATCAGAT TATATCGCTG AGAGAGACCA GTTCACTTTC TAACTCTATG
TTTCAGCAGT TATCTGGTAT CAGACAAGAT GAAGGGATAA ATTTTTCGCC TAGTGGCCTG
TTAAAAATTA GTCTTAAATC AAATGTAAAT GACGTGATAC TTGAAAAAAG TATTGAAATT
TTGGTCCAGC CACTAAATCT GCATCCGTTG ATTGAATATC AAGTAATAAA TTAA
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| Protein sequence | MGALMSHSKS KGMALFQVLL ITMVISILAL QFTQTAKNQI IIAATIVDRV QAQVNLKNTE
SELLFALFTE VRTGQTSDEN QLAQHWNFHG KPFTTDENVK VSMQDQNGLI SLYKGRPQKL
LESMINYLGV ENVSASVASN SLIDWQDGDD LIRANGAEAS YYGAPGMPTN MPLQTYSETQ
NIRGFTPELV EALAPYVTIR PQTYFNPMTA PKEILAIVVG ADKANQIISL RETSSLSNSM
FQQLSGIRQD EGINFSPSGL LKISLKSNVN DVILEKSIEI LVQPLNLHPL IEYQVIN
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