| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3020 |
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| Symbol | |
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| ID | 5613871 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3651949 |
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| End bp | 3654039 |
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| Gene Length | 2091 bp |
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| Protein Length | 696 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640933957 |
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| Product | Type II secretory pathway component PulD-like protein |
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| Protein accession | YP_001474752 |
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| Protein GI | 157376152 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000150174 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000000799268 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAATCTAG TTAAGAAGAA TTTTTTTGGT TTGAAAATAA ACCAACTGGC AATAGCCGTG
TCCTGTGCGC TTTTATTAAC GAATTGTGCA TCTACTTCTG AGCATAAAGT CGACTATTTA
GAAACCGGTG ATAAATTTCA AATAAAACCT TCTTACCTGA AAAGTGATAA ACTTTCCGAT
GGTATAGTAG AACAGACAAC TCAGACGGAT GAAGAGTCTG AAATGTCTGG AGAGCTAGGG
GTTGAAAAAC TTAGTCCGTT ATCCAGAGAA AAGGTTAGTG TTTCCTCTGA AGGATTAAAT
CGGCATTTTA GCGATAGCAA AGAACTTTCT GTTACTGTCA ATGATATGAC AATGAAATCT
TTCTTGAATT ATGTCTTCGG TGATCTACTT TCGATAGATT ATGTTATTGG TAAAAATGTA
GAAAACTCTA AAATAACCCT AAATGTAGCA AGTAAAATCA GTCCCAGAAA ACTGTTTGAA
ATGACCACTC AGGTTCTACA GGAACAAAGA GTTGGCATTA GGTTGAATGA TGGTATCTAT
TACATATATC AGCTTCCACA AGGCGGTAAA GTCAGCGTCG CCATGGGGTT TGGGCGAGAC
AGCCAATCTG TACCACAGAA CTCCGGGCAG GTACTGCAGG TTGTTCCACT TAAATATGGT
GTTCGGATTA GCGTCGAGAG AACGCTAAAC GGCTTGGTCG ATGCGAAAAT AACACCAGAT
TTTGAACAAA GTGCATTGTT TATTCAGGGA ACACGCGATC AAATTATACG AGCACTCGAT
CTGATTCGCC TTCTTGATGT ACCTTCCAAT AGAGGCAAGT ATATATCCTT GATATCTCCA
GTTTTTATTT CGGTTGATGA TTTTGTTTCA TCGACCACAG AACTACTTAA AACGGAAGGT
ATCGAGATCC CTAAACCGGG TAGTAATAAC GGTAACTTAT TGTTTGTGCC GTTAAGTCAA
CTAGGGTCAG TGGCTGTTTT CTCGGCTGAG CAAGAGTTGC TAAATAGAGT CGAGTATTGG
GCGGCACAAA TTGACAAGCC CAGTAAAGGG ACTGAGCGTC AGTATCATAT CTACACACCA
AAGTTCGCTC GAGCATCCGA TCTGGGTGAC AGTATCTCTC CGCTTATTAG CGGGGAGAGC
TATTCGGGGA ATAGTAAAAA AACATCGAGT AAAGATAATA AAGATTCATC GGTAGTGGAT
AATAATAGCT CTATGTCTAC TCTAACCAGT AACGATAAGA TGACCTTGGT CGTCGACGCA
CGGTCTAACT CTTTAATATT TCATGCATCG GGTACAGAAT ATCAATCTAT CCTTCCTCTC
GTGCAAAGAA TGGATATTTT GCCAAAGCAA GTCTTGTTAA GCGTGACGAT TGCTGAAGTC
AAATTAACTG GTGAATTTAA GCGTGGTTTC GAATTTGCGC TCAGCAGTGG TAATTTTAGC
GGGTCTACCA AGGGCGGATT AGGCTTAGAT GAAATTGTGG GAGGGACTTT TAGTTGGAAG
TCGGGGGCAA ATGAGATTAT TGGCAAATTT GTCGAAGAAA ACTCCCAAGT TAACATTCTA
TCTAAACCCT CTCTGCTTGT TCGTGACGGC ACCGAAGCCA ACATTAATGT CGGCGACAAG
ATCCCGGTCA GTAGTGGTAG TTCATCTAGT GGAAGTGGTG AGGTGGTTAC CGAAAATATC
ACCTATCGTG AAACGGGGAT TAAATTGACG GTGACGCCAA CGGTAAACGC GCAAGGTGTG
GTTATCATGG AGATTAATCA GGAGATCTCC AACCAGGTCG TCGGCCCGGT GGGTAAGGGA
GGTAACCCGA CCTTTTTCGA CCGAAGTATC AAAACAGAGG TGGTTGCAGA TACCGGGCAG
ACGATTTTGT TGGGTGGTTT GATAAGTGAC GACACTACAA ACAGCAATAA AGGTGTACCA
TATCTTAAAT CTATTCCCTT AATAGGTGCT CTTTTTGAGT CGGATTCAAA GAACAATACC
AAAACTGAGT TGGTCATCAT GGTTACGCCA AAGATTGTCG AGCGTTCGAG TCAATGGAAT
GGGATTCTGA ATCAGTTCCA GAAGGCCTTG ACCAACATAG ATATCGAATA A
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| Protein sequence | MNLVKKNFFG LKINQLAIAV SCALLLTNCA STSEHKVDYL ETGDKFQIKP SYLKSDKLSD
GIVEQTTQTD EESEMSGELG VEKLSPLSRE KVSVSSEGLN RHFSDSKELS VTVNDMTMKS
FLNYVFGDLL SIDYVIGKNV ENSKITLNVA SKISPRKLFE MTTQVLQEQR VGIRLNDGIY
YIYQLPQGGK VSVAMGFGRD SQSVPQNSGQ VLQVVPLKYG VRISVERTLN GLVDAKITPD
FEQSALFIQG TRDQIIRALD LIRLLDVPSN RGKYISLISP VFISVDDFVS STTELLKTEG
IEIPKPGSNN GNLLFVPLSQ LGSVAVFSAE QELLNRVEYW AAQIDKPSKG TERQYHIYTP
KFARASDLGD SISPLISGES YSGNSKKTSS KDNKDSSVVD NNSSMSTLTS NDKMTLVVDA
RSNSLIFHAS GTEYQSILPL VQRMDILPKQ VLLSVTIAEV KLTGEFKRGF EFALSSGNFS
GSTKGGLGLD EIVGGTFSWK SGANEIIGKF VEENSQVNIL SKPSLLVRDG TEANINVGDK
IPVSSGSSSS GSGEVVTENI TYRETGIKLT VTPTVNAQGV VIMEINQEIS NQVVGPVGKG
GNPTFFDRSI KTEVVADTGQ TILLGGLISD DTTNSNKGVP YLKSIPLIGA LFESDSKNNT
KTELVIMVTP KIVERSSQWN GILNQFQKAL TNIDIE
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