| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3018 |
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| Symbol | |
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| ID | 5613869 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3648042 |
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| End bp | 3649664 |
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| Gene Length | 1623 bp |
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| Protein Length | 540 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640933955 |
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| Product | hypothetical protein |
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| Protein accession | YP_001474750 |
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| Protein GI | 157376150 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00759929 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000786199 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGGAACAGA TAAGAGTTAT TTTTAACCGG TATCCGAGTC TCTCTTTTGT CATATTAGCT
TTTATCACAT CTTTACTGGC TTACTGGCCA AGTTTTTCCG TTCCTTTCTA TCTCGATGAC
AGAGTCTCGA TTGCTGAAAA TCCGTTGTTA TTAACTGGCA CTATGAGTCA GATATGGCAA
GTATACGGAA TGCGATTTGT TGGTTATCTC TCTTTTTGGC TCAATGTGCA GACATCTGAA
CTGAATCTTT TCGGCTTTCA CCTGACTAAC TACGCCATAC ACCTACTTAA TGGTTTACTC
ATCTTCGCTA TAGTTAAGCA ACTGCTAAAG TGCTTTGCAG GTGATTGGTC GCTACCCAGA
CAACATATAT TTGCCTCAAC AGTAGCCCTT ATATGGCTGC TGCATCCTTT AAATACTCAG
GCCGTCACCT ACATCGTTCA AAGGCTGGCC TCACTGGTTA CCCTCTTCTA CCTTGTGGCC
CTTTATAGCT ATTTGAAATT TCGATATGGC AATCGGAAGG TTATTTGGCT ATCGCTGTTT
GTTTTTAGTT GTGTGCTTGG CCTGTTGACG AAGCAAAACT TCATCGTCTT GTTTGCATTT
ATTGTGTTCT ACGAACTTAT CTATGCTGAA CAGGTAATTA AGAAGTGGCT TCTTGTTGGT
TTTGCCGCAA CTTTTGTCAC GTTAGCTATC GCGTACCCAT TTATCCCTCA TGTCATAGAA
ATTATATCGG GTATGACTAA AGAGACTGCT GCGATCTCCC GCTACGATTA TTTTGTGACT
CAAACCTTGG TGATATGGGA ATATATTCTA AAGTTCTTCA TACCTTATCC GCTACAACTT
GATATGGGCG TTGATATAGC AAAAACTTCT TCAGGGATCC ATTTTGCAGC ACTTTTGGCT
CATCTGACTC TAATCTTGTC AGCACTGTTC GCGGCTAAGC ATTTGCCTCT TTTCAGCGTA
GGTATCATAG TTTTTTACAC AGGCCACAGT GTAGAGTCTT TTGTCATCCC GATAACGGAC
CTGGCTTTTG AGCACCGCAC CTATCTTCCG AATATTGGTT TAACATTGGC TGTCTGCGGT
CTGTTGTTTT ATATATCTGA CAAGCAAGAC AAATCAAACA AAATTATCAC TGCCGTAATT
CTACTAATCT GCGGAATGTT CGCTGTTATG ACTTTTGAAA GAAACACTCA GTGGCAAGAA
CCATATGCGT TTGCTGAAAA TGAATATAAT CTCGAGCCTG ATAGTCCGAG AGCAATGACT
TCCTATGCGC TTGAATTAGT TAAAGTGGGA GAGTTAGCAC AAGCTGAGAA ACTCCTGGTT
AGTGCCGTGA ATTCAAATAT GCAAAAAGGA AAGCTGACGG TAACCAGTAT CAATAACCTT
ATGCTGCTGC TGTTTAACCA AGGTAAGTAC CAGTCTGCTG TAAACACCGG AATGATGGCG
TTAAAATACA TCAAAAGGCC CAACGATCGA AGTCTAACAC TGAGTAACAT TGCCTATGGC
TACATTAAGA TGGGCTACTG TGATTTTGCG ATAGGTTTGA CCCGGAAAGC CATAAAACTT
GATGCACATA ACGAGAATGC AAAAAATTAT TTAAATCACT GTTTATCCCT GAAACCGCAA
TGA
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| Protein sequence | MEQIRVIFNR YPSLSFVILA FITSLLAYWP SFSVPFYLDD RVSIAENPLL LTGTMSQIWQ
VYGMRFVGYL SFWLNVQTSE LNLFGFHLTN YAIHLLNGLL IFAIVKQLLK CFAGDWSLPR
QHIFASTVAL IWLLHPLNTQ AVTYIVQRLA SLVTLFYLVA LYSYLKFRYG NRKVIWLSLF
VFSCVLGLLT KQNFIVLFAF IVFYELIYAE QVIKKWLLVG FAATFVTLAI AYPFIPHVIE
IISGMTKETA AISRYDYFVT QTLVIWEYIL KFFIPYPLQL DMGVDIAKTS SGIHFAALLA
HLTLILSALF AAKHLPLFSV GIIVFYTGHS VESFVIPITD LAFEHRTYLP NIGLTLAVCG
LLFYISDKQD KSNKIITAVI LLICGMFAVM TFERNTQWQE PYAFAENEYN LEPDSPRAMT
SYALELVKVG ELAQAEKLLV SAVNSNMQKG KLTVTSINNL MLLLFNQGKY QSAVNTGMMA
LKYIKRPNDR SLTLSNIAYG YIKMGYCDFA IGLTRKAIKL DAHNENAKNY LNHCLSLKPQ
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