Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3017 |
Symbol | |
ID | 5610646 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3647080 |
End bp | 3647787 |
Gene Length | 708 bp |
Protein Length | 235 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 640933954 |
Product | glycosyl transferase family protein |
Protein accession | YP_001474749 |
Protein GI | 157376149 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0463] Glycosyltransferases involved in cell wall biogenesis |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0914269 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00000277643 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAAACAAG CTATTGTTAT TCCCGCATTT AATGAAGAGA AAACGATTTG TAAAGTAATC GAGTCGGTAC GCCCGTTTAG TGACTTTGAT ATTATTGTTG TTGATGATGG CAGTGCGGAT TCAACTTCTT CGTTAGTTAA ACAGTTTGAA CATGTTATTT TACTGCCATT AGCGACTAAC CTAGGTGCAT GGAAGGCGAT GCAAACAGGT ATTCGTTTTT GTTATGAGAA TGATTATCAG CGCGTGATAA CCTTTGATGC TGACGGGCAA CACTTACCTG ATTCAATTTT AGCATTAACC TCATTTCAGA AAGCGTCTAA TAGCGATGTT GTGATCGGCT CTTGTACCCA AAGGGGGAGT GTGGCTCGTC ATATAGCCTG GCGCTTATTC CGTAAGTTAT CAGGTGTGAA AATTATGGAT ATTACCTCGG GGCTGAGACT ATATAATCGA GCGGCTATGT CAGTGTTAAG TACACGTGAA GCAACATTAC TAGAGTACCA AGATGTGGGT GTACTTCTTA TGCTTAAAAA TTTCGGCTTA TCATTTGATG AGGTCAAGGT TGAAATGGAA CCGAGACAAG ATGGAATTTC ACGTATATTC CATTCTTGGT GGGCGGTGGC TTACTATATG ACTCATACTA GTCTTCTTTG TATCAGTAAG GCACGTAAAA ACAGTGAGTT ACAATGTCAA TCCTCTTTAA ATCGTTAA
|
Protein sequence | MKQAIVIPAF NEEKTICKVI ESVRPFSDFD IIVVDDGSAD STSSLVKQFE HVILLPLATN LGAWKAMQTG IRFCYENDYQ RVITFDADGQ HLPDSILALT SFQKASNSDV VIGSCTQRGS VARHIAWRLF RKLSGVKIMD ITSGLRLYNR AAMSVLSTRE ATLLEYQDVG VLLMLKNFGL SFDEVKVEME PRQDGISRIF HSWWAVAYYM THTSLLCISK ARKNSELQCQ SSLNR
|
| |