| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3017 |
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| Symbol | |
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| ID | 5610646 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3647080 |
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| End bp | 3647787 |
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| Gene Length | 708 bp |
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| Protein Length | 235 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 640933954 |
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| Product | glycosyl transferase family protein |
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| Protein accession | YP_001474749 |
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| Protein GI | 157376149 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0463] Glycosyltransferases involved in cell wall biogenesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0914269 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000277643 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAACAAG CTATTGTTAT TCCCGCATTT AATGAAGAGA AAACGATTTG TAAAGTAATC
GAGTCGGTAC GCCCGTTTAG TGACTTTGAT ATTATTGTTG TTGATGATGG CAGTGCGGAT
TCAACTTCTT CGTTAGTTAA ACAGTTTGAA CATGTTATTT TACTGCCATT AGCGACTAAC
CTAGGTGCAT GGAAGGCGAT GCAAACAGGT ATTCGTTTTT GTTATGAGAA TGATTATCAG
CGCGTGATAA CCTTTGATGC TGACGGGCAA CACTTACCTG ATTCAATTTT AGCATTAACC
TCATTTCAGA AAGCGTCTAA TAGCGATGTT GTGATCGGCT CTTGTACCCA AAGGGGGAGT
GTGGCTCGTC ATATAGCCTG GCGCTTATTC CGTAAGTTAT CAGGTGTGAA AATTATGGAT
ATTACCTCGG GGCTGAGACT ATATAATCGA GCGGCTATGT CAGTGTTAAG TACACGTGAA
GCAACATTAC TAGAGTACCA AGATGTGGGT GTACTTCTTA TGCTTAAAAA TTTCGGCTTA
TCATTTGATG AGGTCAAGGT TGAAATGGAA CCGAGACAAG ATGGAATTTC ACGTATATTC
CATTCTTGGT GGGCGGTGGC TTACTATATG ACTCATACTA GTCTTCTTTG TATCAGTAAG
GCACGTAAAA ACAGTGAGTT ACAATGTCAA TCCTCTTTAA ATCGTTAA
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| Protein sequence | MKQAIVIPAF NEEKTICKVI ESVRPFSDFD IIVVDDGSAD STSSLVKQFE HVILLPLATN
LGAWKAMQTG IRFCYENDYQ RVITFDADGQ HLPDSILALT SFQKASNSDV VIGSCTQRGS
VARHIAWRLF RKLSGVKIMD ITSGLRLYNR AAMSVLSTRE ATLLEYQDVG VLLMLKNFGL
SFDEVKVEME PRQDGISRIF HSWWAVAYYM THTSLLCISK ARKNSELQCQ SSLNR
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