Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3012 |
Symbol | |
ID | 5611466 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3643747 |
End bp | 3644292 |
Gene Length | 546 bp |
Protein Length | 181 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 640933949 |
Product | dTDP-4-dehydrorhamnose 3,5-epimerase |
Protein accession | YP_001474744 |
Protein GI | 157376144 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes |
TIGRFAM ID | [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.481041 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.00156221 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAATTTA TTAATACAAC CATTCCAGAT GTAAAAATCA TCGAACCACA AGTGTTTGGT GATGAACGTG GTTTCTTTAT GGAGACATTT AGAACTTCTT TATTTAAAGA AAAATGCGGT GATATAGAGT TTGTGCAAGA AAACCACAGT AAATCGAATC ACGGTATTTT ACGTGGTCTG CATTACCAAA CAGAGCAAAC CCAAGGTAAA TTAGTTCGCG TTACCAAAGG CGAAGTTTTT GATGTCGCCG TCGATTTAAG AAAAGACTCC CCAACCTATG GACAATGGGT TGGAGAAATT CTGTCTGCTG AAAATAAACG CCAGTTATGG GTGCCAGCAG GTTTTGCTCA TGGCTTTTAT GTGATGAGTG AAGACGCCGA GTTTATGTAC AAATGCACAG ATTATTATAA CCCAAGTGCA GAGGTATCAA TTAAGTGGGA TGATCCAACA CTTAATGTTC AGTGGCCATG GGTAGATAAA CAAGCACCAT TACTGTCTGA AAAAGATAAA AACGGATTAA GCTTTGAACT GGCTCCAAAG TTCTAA
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Protein sequence | MKFINTTIPD VKIIEPQVFG DERGFFMETF RTSLFKEKCG DIEFVQENHS KSNHGILRGL HYQTEQTQGK LVRVTKGEVF DVAVDLRKDS PTYGQWVGEI LSAENKRQLW VPAGFAHGFY VMSEDAEFMY KCTDYYNPSA EVSIKWDDPT LNVQWPWVDK QAPLLSEKDK NGLSFELAPK F
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