| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3011 |
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| Symbol | |
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| ID | 5611465 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3642790 |
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| End bp | 3643701 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640933948 |
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| Product | dTDP-4-dehydrorhamnose reductase |
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| Protein accession | YP_001474743 |
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| Protein GI | 157376143 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1091] dTDP-4-dehydrorhamnose reductase |
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| TIGRFAM ID | [TIGR01214] dTDP-4-dehydrorhamnose reductase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.289187 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00172114 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAGTAT TAGTAACAGG AAAAGGTGGT CAACTGGCAT GGGAGCTAGA GCAAACCACA
CCAAGCTATA TTGAAATCAT CAGCTTTAGT GCTAATGAGC TGGATATCAC CAACCAAGCA
CAAGTCAATG AAGTAGTAAT AGCTCATTCA CCAGACATCA TTATCAATGC AGCCGCTTAT
ACCGCAGTAG ATAAAGCAGA AACTGATAAA GAAACCGCCT ATGCCGTAAA CGAAAAAGGC
AGTGAATATT TAGCGTTAAT CTGTAAAGAA ATTAGCGCAA AGTTAATTCA TATATCAACT
GACTTTGTTT TTGATGGCTT AAAAAATACG CCATATCAAA CTGACGATAC CCCAAACCCT
GTTAACGTAT ATGGTGATTC AAAATTGCAA GGTGATATTA AAGTAAATAA TCTCTTGGGG
TGTCAAGCTA TAATTATTCG TACTGGATGG ATGTATTCAG AAAATGGTAA TAACTTCGTA
AAAACCATGC TACGTTTAAT GGTAGAGAAA GAACAGCTCG GTATCATATA TGATCAAGTA
GGCACACCAA CTTGGGCGAA AGGGCTAGCA GAAATGATTT GGGCATTAAT TTCTCGTCAT
TCCGGAATCG AGGAACGAGA TATCCGGAAT CTAAGTACCT CTTCAGCTCA AATTTACCAT
TGGACAGATG CAGGCGTTGC CTCTTGGTAC GACTTCGCAG TAGCTATTCA AGAGCTCGCA
ATTGAAAAAG GCATGTTAGA CAAAGCGATT CCAGTACGCC CAATCCCCGC AAGTGCTTAC
CCTACACCAG CTCAACGGCC AAGTTTTAGC GTGATAGATA AAACCACAGC AGAGCAAGCA
AGCAGGGTAG AAACTAAACA CTGGCGCAAA CAACTATCAG CAATGCTAGA TGAACTCCAT
TCTAGCTCTT AG
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| Protein sequence | MKVLVTGKGG QLAWELEQTT PSYIEIISFS ANELDITNQA QVNEVVIAHS PDIIINAAAY
TAVDKAETDK ETAYAVNEKG SEYLALICKE ISAKLIHIST DFVFDGLKNT PYQTDDTPNP
VNVYGDSKLQ GDIKVNNLLG CQAIIIRTGW MYSENGNNFV KTMLRLMVEK EQLGIIYDQV
GTPTWAKGLA EMIWALISRH SGIEERDIRN LSTSSAQIYH WTDAGVASWY DFAVAIQELA
IEKGMLDKAI PVRPIPASAY PTPAQRPSFS VIDKTTAEQA SRVETKHWRK QLSAMLDELH
SSS
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