Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3008 |
Symbol | |
ID | 5613030 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3640188 |
End bp | 3640970 |
Gene Length | 783 bp |
Protein Length | 260 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 640933945 |
Product | HAD superfamily hydrolase-like protein |
Protein accession | YP_001474740 |
Protein GI | 157376140 |
COG category | [R] General function prediction only |
COG ID | [COG5610] Predicted hydrolase (HAD superfamily) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.254184 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.00785062 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTTTGCAT CATTGAATAA CCCGAATGCT TATAAGAAAT TTGAAAAAGT TGTAAGCTCG GACCATATAG ACGTTGTCTC AGTTGATATT TTTGATACCT TACTTTTTAG GACTACATGC CCTGAGTATC TTAGGTTTGA AAAGATGGCA GAACTTTGGT TAAAAAAGCT TAAAGCAGAA AGCGCCTGTG TCAAAATGTC AATTGATGAT ATTACAAGTC TAAGAGTTTT TGCTGCTATG GCTGCTTACC GAAACACTAA AGACTTTAAT GGTATCCGCG AAGCTCAGCA TAATGAAATA TTAAAAATTG TCTGTGAAAA TTTGCAACTA TCCCATGAAT GGATTTCAAC CTTCGCAGAA GAAGAGTTAA CTTATGAAAA GAGTGTCCTT TTTGTAAACC CCTTGTTACT CAATATATTA AAATCTGCAA GAAATAAAGG GAAAAGAGTT ATTGGCATCT CAGATATGTA CTTATCCTCT AATAAAATTG AAGATCTACT TAATGATAAC TTAGGAGGAT TTCAGCTAGA CGCACTCTAT TCTAGTGCTG ATTTTGGTGT TGGTAAGTCA TCAGGTGATC TTTATCAACG GGTGAAGAAA ATTGAGATGG TTGACTACGA TAAAATTGCG CATTGTGGGG ATAATTATTT CTCTGATTTT GTACGTTCAA ATGAACTTGG CATTAACAGT GTTTATGTTC CGCGACCATT AATGTGGCGT TTTATTCATA AGGTGCGCCT CGTGGCATAC TTGATTAAGC ATAGAAAAGT TAGGCTTAGA TAA
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Protein sequence | MFASLNNPNA YKKFEKVVSS DHIDVVSVDI FDTLLFRTTC PEYLRFEKMA ELWLKKLKAE SACVKMSIDD ITSLRVFAAM AAYRNTKDFN GIREAQHNEI LKIVCENLQL SHEWISTFAE EELTYEKSVL FVNPLLLNIL KSARNKGKRV IGISDMYLSS NKIEDLLNDN LGGFQLDALY SSADFGVGKS SGDLYQRVKK IEMVDYDKIA HCGDNYFSDF VRSNELGINS VYVPRPLMWR FIHKVRLVAY LIKHRKVRLR
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