| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3008 |
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| Symbol | |
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| ID | 5613030 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3640188 |
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| End bp | 3640970 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 640933945 |
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| Product | HAD superfamily hydrolase-like protein |
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| Protein accession | YP_001474740 |
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| Protein GI | 157376140 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG5610] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.254184 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00785062 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTTGCAT CATTGAATAA CCCGAATGCT TATAAGAAAT TTGAAAAAGT TGTAAGCTCG
GACCATATAG ACGTTGTCTC AGTTGATATT TTTGATACCT TACTTTTTAG GACTACATGC
CCTGAGTATC TTAGGTTTGA AAAGATGGCA GAACTTTGGT TAAAAAAGCT TAAAGCAGAA
AGCGCCTGTG TCAAAATGTC AATTGATGAT ATTACAAGTC TAAGAGTTTT TGCTGCTATG
GCTGCTTACC GAAACACTAA AGACTTTAAT GGTATCCGCG AAGCTCAGCA TAATGAAATA
TTAAAAATTG TCTGTGAAAA TTTGCAACTA TCCCATGAAT GGATTTCAAC CTTCGCAGAA
GAAGAGTTAA CTTATGAAAA GAGTGTCCTT TTTGTAAACC CCTTGTTACT CAATATATTA
AAATCTGCAA GAAATAAAGG GAAAAGAGTT ATTGGCATCT CAGATATGTA CTTATCCTCT
AATAAAATTG AAGATCTACT TAATGATAAC TTAGGAGGAT TTCAGCTAGA CGCACTCTAT
TCTAGTGCTG ATTTTGGTGT TGGTAAGTCA TCAGGTGATC TTTATCAACG GGTGAAGAAA
ATTGAGATGG TTGACTACGA TAAAATTGCG CATTGTGGGG ATAATTATTT CTCTGATTTT
GTACGTTCAA ATGAACTTGG CATTAACAGT GTTTATGTTC CGCGACCATT AATGTGGCGT
TTTATTCATA AGGTGCGCCT CGTGGCATAC TTGATTAAGC ATAGAAAAGT TAGGCTTAGA
TAA
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| Protein sequence | MFASLNNPNA YKKFEKVVSS DHIDVVSVDI FDTLLFRTTC PEYLRFEKMA ELWLKKLKAE
SACVKMSIDD ITSLRVFAAM AAYRNTKDFN GIREAQHNEI LKIVCENLQL SHEWISTFAE
EELTYEKSVL FVNPLLLNIL KSARNKGKRV IGISDMYLSS NKIEDLLNDN LGGFQLDALY
SSADFGVGKS SGDLYQRVKK IEMVDYDKIA HCGDNYFSDF VRSNELGINS VYVPRPLMWR
FIHKVRLVAY LIKHRKVRLR
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