| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2986 |
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| Symbol | |
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| ID | 5610526 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3615825 |
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| End bp | 3617552 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640933926 |
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| Product | TrkA domain-containing protein |
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| Protein accession | YP_001474721 |
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| Protein GI | 157376121 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0471] Di- and tricarboxylate transporters |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.479743 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTCTGG ATGCTTATTT AACTATCGGA ATATTTCTCG CGACGATTGT GGGTCTTATT
CGGTTTCAGA GTCGACCGGC ATTGGTGTTC GGTGTGGCTC TATTGACTCT GGTCGGGCTG
AATCTGGTCT CTAAAGAGCA GCTGCTTTCG AGCATGTCCA ATCCTGGATT AGTCACGCTT
GTGCTCTTGA TCTTGTGCTC CTTTGCGCTG GAGAAGACAC GGCTTCTGCG TGTCATCGCT
TCTAAAGTGA TAGTGAGCAG TTACAACTCT ACCTGGTTAC GCTTGTTCGG TATTACCGCA
CTGAGCTCCG CTGTGCTGAA CAATACAGCG GTGGTTGCAA CCTTGCTTTC GCCTATTCGA
AATAATCCCC ATCATTTTTC CAGTAAATTA CTTTTGCCTT TCTCCTACGC CGCAATATTA
GGTGGAACCT TAACCCTGAT TGGGACCTCG ACAAACCTTA TCGTGAATAG CCTCTATATC
GATGCGCAGG GGAAGTCGTT AAACTTTTTC TCCTTCACGG CCATCGGTGC AATATTGGTA
ATCGCTTGTG GATTAGTGTT GAGGGTCGCG TCTCGTTGGT TACCCGAAAT CGAGCACAAT
GATACCTGCT CCAAAGGCTA TTTTATCGAT GCAAAGGTTG TCGAAGGCTC AGAGTTAATT
GGCCGTTCGG TTGAGGGGAA TGGTTTAAGG CATCTCGAAT CTCTGTTTCT AGTCGAAGTA
GTGCGCAGTG GACGTTTAAT CAGTCCGGTG ACCCCAGCAG AAGTACTGCA ACTCGGTGAC
AGGCTTATAT TCAGCGGTGA TATCGCGAAG GTGATGCAGT TGAGTCAATT TTCCGGACTT
GAGATGTTTG CTGAGAAAAA TGGCCTGTTA GACTCAAACC TGACCGAAGT TGTTGTTAGG
CAGGAGAGTA TACTCATCGG TAAAACATTA AAGGGTGCGG GCTTTAGGGC ACTGTTTGAT
GGCGCTGTGG TGGCGATTAG GCGAGATGGT GAGGATATAT CGGGTAAGTT AGGTGAAGTA
GTGCTCAAAG CGGGTGACTT TCTAGTTTTA GCTGTTGGTA AAGACTTTAG GACGCGGAGA
AATATTAGTA AAAACTTTAT CGTTATTAGT GGGGTAGAAC CTGAGATTCG GATTAATGGT
CATAAGGCTT GGCTTTCTAT CGGGGGCTTC TTATTAACAA TCGTATTGGC GGCGACTGGC
ATCATCGATA TGCTACAGGG ATTAGTGCTA CTTTTGGGAG TCTTGATTTT TAGCGACTCG
ATTAGCGTGA ATGAAGTGAC AAGAAGGTTT CCTGTTGATA TCTGGCTTAT CGTATCTTCG
GCAATTTTGC TTTCTCATGC GTTGGTTAAT ACAGGTGTAG TTGAAGTGTT GGCTGGTTTA
GTCGGTGAAG TAACAGACAT AGATCACCTT TATTTAGCGC TGATACTTGT TTATTTAGCT
ACTTGGTTAA TGACTGAGTT AATCACGAAT AATGCAGCAG CTGCGTTGAT GTTCCCTGTC
GCTTACAGTA TTGCGTTAGG TTTCGGGGTT GATATCTTGC CTTTCATCAT GACCGTAGCT
TTTGCTGCCA GTTGTAGTTT TATCAGTCCC TATGGATACC AAACAAACTT GATGGTTTAC
AATGCTGGTC AGTATCGATT GATGGATTTT ATCAAAATTG GCCTACCCGT TAGTCTGGTG
TATGCCGTTA TCGTATTAAC CACCGTACCG ATATTTTTTC CGTTTTAG
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| Protein sequence | MSLDAYLTIG IFLATIVGLI RFQSRPALVF GVALLTLVGL NLVSKEQLLS SMSNPGLVTL
VLLILCSFAL EKTRLLRVIA SKVIVSSYNS TWLRLFGITA LSSAVLNNTA VVATLLSPIR
NNPHHFSSKL LLPFSYAAIL GGTLTLIGTS TNLIVNSLYI DAQGKSLNFF SFTAIGAILV
IACGLVLRVA SRWLPEIEHN DTCSKGYFID AKVVEGSELI GRSVEGNGLR HLESLFLVEV
VRSGRLISPV TPAEVLQLGD RLIFSGDIAK VMQLSQFSGL EMFAEKNGLL DSNLTEVVVR
QESILIGKTL KGAGFRALFD GAVVAIRRDG EDISGKLGEV VLKAGDFLVL AVGKDFRTRR
NISKNFIVIS GVEPEIRING HKAWLSIGGF LLTIVLAATG IIDMLQGLVL LLGVLIFSDS
ISVNEVTRRF PVDIWLIVSS AILLSHALVN TGVVEVLAGL VGEVTDIDHL YLALILVYLA
TWLMTELITN NAAAALMFPV AYSIALGFGV DILPFIMTVA FAASCSFISP YGYQTNLMVY
NAGQYRLMDF IKIGLPVSLV YAVIVLTTVP IFFPF
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