| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2970 |
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| Symbol | |
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| ID | 5610546 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3598720 |
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| End bp | 3599820 |
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| Gene Length | 1101 bp |
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| Protein Length | 366 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640933910 |
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| Product | DegT/DnrJ/EryC1/StrS family protein |
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| Protein accession | YP_001474705 |
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| Protein GI | 157376105 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.952071 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATTTA TCGATCTTGC AGCCCAATAT AAACACCTTA AAACGCGTAT TGATGACCGA
GTTCAAACTG TTTTAGACCA CGGTAAATAT ATTATGGGCC CGGAAGTTGC GGAACTTGAG
TCTCAACTTG CGGACTATGT TGGCGTGAAG CATGCGGTGA CCTGTGCGAA CGGTACCGAT
GCTTTACAGC TCTGCATGAT GGTGTTGGAT ATTAAAGAGG GGGATGCTGT TTTTTGCCCT
ACCTTTACTT TTTTTGCCTC AGCAGAAGTC ATCGCCTTTG CCAATGCGAC ACCTGTGTTT
GTCGATTCTG ATGCACAAAC GTTTAATATC TGCCCTGAGG ACCTAGAAAA AAGGATCCTG
GCAGTTATTG AGGAGGGTAA GTTAACTCCT AAAGCTATTA TGGCCGTGGA TCTATTTGGC
TTGCCCGCCA ATTATCCTGA AATTCAGAAA ATTGCCGATA AGTATGGTCT TAAATTAATC
GAAGATGCCG CTCAAGGTTT CGGTGGCGAG ATTAATGGGC AACGCGCAGG CAGCTTTGGT
GATATAGCAA CAACCAGTTT TTTCCCGGCT AAACCTCTTG GCTGTTATGG TGATGGCGGA
GCCGTATTTA CCAATAACGA TGAATATGCT GCACTTCTTA AGTCTTTTAG GGTTCACGGC
AAAGGCTGTG ATAAGTACGA TAACGTAAGA ATTGGCATGA ATAGCCGTTT AGATACGATA
CAGGCTGCCA TATTACTGGA AAAGCTGGCG GTATTTCCTG AAGAGCTGGT TAATCGTAAT
AAAGCGGCAT CTCTTTATGA TGCCAAGTTA AGTGATAAAT ATGCTACCCC TAAGGTTCCT
GAAGGCTTTT TATCATCCTG GGCTCAGTAT ACTTTGCTCG ATGATGACCG TGATGTAGTC
ATGGCTGAAT ATAAGGCCAA AGGTGTGCCT ACTATGATTT ACTATGGTAC ATGTATGCAC
CAGCAGACGG CTTTTAACCA TTTAGGGTAC CAGATGGGAG ATTTCCCTGT CGCTGAGCAA
TTAGCCGATC ATGTGTTTAG CCTGCCTATG CATCCTTATC TGACCGAAGA GTGCATTACT
ATGTCTCTAT CAAATTCATA A
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| Protein sequence | MQFIDLAAQY KHLKTRIDDR VQTVLDHGKY IMGPEVAELE SQLADYVGVK HAVTCANGTD
ALQLCMMVLD IKEGDAVFCP TFTFFASAEV IAFANATPVF VDSDAQTFNI CPEDLEKRIL
AVIEEGKLTP KAIMAVDLFG LPANYPEIQK IADKYGLKLI EDAAQGFGGE INGQRAGSFG
DIATTSFFPA KPLGCYGDGG AVFTNNDEYA ALLKSFRVHG KGCDKYDNVR IGMNSRLDTI
QAAILLEKLA VFPEELVNRN KAASLYDAKL SDKYATPKVP EGFLSSWAQY TLLDDDRDVV
MAEYKAKGVP TMIYYGTCMH QQTAFNHLGY QMGDFPVAEQ LADHVFSLPM HPYLTEECIT
MSLSNS
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