Gene Ssed_2967 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2967 
Symbol 
ID5613744 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand- 
Start bp3595649 
End bp3596749 
Gene Length1101 bp 
Protein Length366 aa 
Translation table11 
GC content41% 
IMG OID640933907 
ProductUDP-N-acetylglucosamine 2-epimerase 
Protein accessionYP_001474702 
Protein GI157376102 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0381] UDP-N-acetylglucosamine 2-epimerase 
TIGRFAM ID[TIGR00236] UDP-N-acetylglucosamine 2-epimerase 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.00874366 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.140348 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGGTTT TAACGGTAAT TGGTGCAAGA CCACAGTTCA TTAAAGCGGC TACAGTGAGC 
CGAGCGATTA AAGAACACAA TGAAGAAAAC CCTGATAGAA CAATAAATGA GATTATTGTT 
CATACCGGGC AGCACTATGA CATGAACATG AGCGATATTT TTTTCGAGGA GATGGATATT 
CCTAAGCCTG GTTATTCATT GGGTATCGGT GGAGGTACTC ATGGTGCCAT GACAGGACAG 
CAACTAGAGC AGATAGAGAA AGTGCTGCTT AAAGAGCAAC CTGACTGGGT TCTTGTTTAC 
GGTGATACTA ACTCTACCTT GGCTGGAGCA TTAGCTGCGT CAAAACTTCA TATCAAAGTG 
GCTCATGTTG AGGCTGGATT GCGAAGCTTT AATATGAAAA TGCCTGAAGA GCAAAACCGA 
ATTTTAACCG ATAGAATCAG TTCGGCTCTG TTTTGCCCTA CGCAAACGGC TGTAAAAAAC 
CTAGAAGCTG AGGGATATAG CAATTTTGGT ATAGATATTA ACATCGTTGG TGATGTTATG 
TATGATGCTG CGCTTTTTTA TACCGAACGA GCAGTTAAAC CTAGTTCAAT CGATGACCTC 
GATTTGTCTG ATGGTTTTGT ATTATCGACG ATTCACCGTG CTGAAAATAC CGATGATAGA 
GACAGATTAT CTGAGATTGT TTCAGCACTT AATCAATTGC ACCTTGAAAG ACCAGTTGTA 
ATGCCACTTC ATCCAAGAAC GAAGAAGAAG TTGGAAGAGT TTGGCTTGAA ATTAAATGTA 
AAACTTATCG ACCCGATTGG TTACCTGGAA ATGGTCTATT TATTAGCTCG TTGTACCTTT 
GTAGCCTCTG ATAGCGGCGG CGTTCAAAAA GAAGCGTATT TTTTCAACAA GCATTGCTTA 
GTATTGCGTG ATGAAACTGA ATGGGTCGAG CTGGTAGACA ATGGTTCGAA TTTTATTGTC 
GGTACTAATA AAGAATTAAT TACCAGCAAG GGGGAGGAGA TCCTTCGAAA AGAGCTCCCT 
GGTTCATGTT TCGGGCAAAA CTTATATGGA ACGGGTGATG CTGCAAAACA GGTTGTTGCT 
TTTTTGAATA ATAAAAAGTA A
 
Protein sequence
MKVLTVIGAR PQFIKAATVS RAIKEHNEEN PDRTINEIIV HTGQHYDMNM SDIFFEEMDI 
PKPGYSLGIG GGTHGAMTGQ QLEQIEKVLL KEQPDWVLVY GDTNSTLAGA LAASKLHIKV 
AHVEAGLRSF NMKMPEEQNR ILTDRISSAL FCPTQTAVKN LEAEGYSNFG IDINIVGDVM 
YDAALFYTER AVKPSSIDDL DLSDGFVLST IHRAENTDDR DRLSEIVSAL NQLHLERPVV 
MPLHPRTKKK LEEFGLKLNV KLIDPIGYLE MVYLLARCTF VASDSGGVQK EAYFFNKHCL 
VLRDETEWVE LVDNGSNFIV GTNKELITSK GEEILRKELP GSCFGQNLYG TGDAAKQVVA 
FLNNKK