| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2965 |
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| Symbol | |
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| ID | 5610622 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3593301 |
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| End bp | 3593987 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 640933905 |
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| Product | WecB/TagA/CpsF family glycosyl transferase |
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| Protein accession | YP_001474700 |
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| Protein GI | 157376100 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1922] Teichoic acid biosynthesis proteins |
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| TIGRFAM ID | [TIGR00696] bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000739023 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0744503 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGATCACTG ACATTAAAAG TAAATTAGTT CCTTTTGCAT CATTAGACGA AGCCAGTACG
TTCGTCAGAG AGAATAAAGG AATGTACATA TCCATGAATT TACAAGCACT TGTGGATGAT
AAACTGGTCG ATTTACTAAG TTTACCTAAC GTATATGGAT ATGCTGACGG TATAGGTGCT
CAACTGTTTT TAAATAAAAA GTGTGGGGTT AAGGCGACTA AAATTCCAGG CTGCGAATTA
TGGTTAAATA TTCTTCAGCA AGAACAGGAG AAGTCTTACT CTATTGCTGT TGTTGGTGCT
TCGCCTGATA CTAACAGTAA GACAGTTAAA AAGTTAAAGC TTGATTATCC ACAACATAAT
ATTGATTATT TTGTTGATGG TTATAATTTT GTCGAAGAAC AGCTGATTGA AGAACTGTCA
AAAGGGGATT TTGATATGGT TTTCATCGCT TTAGGTCAGC CTAGGCAAGA AATTTTAGGT
GAGAAAATCT TAAATGCCGT TCCTAATATT ACTGTTTTAG GACTTGGTGG TTCTTTTGAT
GTGTATTGTG GTTTGATTAA TCGTGCACCA AAGCTATTTA TAAAATTACA TATCGAGTGG
CTTTATCGAA TATTGTTAGA ACCAAAAAGA AGTATCAAGC TTGCCATATC GGTTTCACGA
TACTTAGTTA TGATGTTAAA GTCTTGA
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| Protein sequence | MITDIKSKLV PFASLDEAST FVRENKGMYI SMNLQALVDD KLVDLLSLPN VYGYADGIGA
QLFLNKKCGV KATKIPGCEL WLNILQQEQE KSYSIAVVGA SPDTNSKTVK KLKLDYPQHN
IDYFVDGYNF VEEQLIEELS KGDFDMVFIA LGQPRQEILG EKILNAVPNI TVLGLGGSFD
VYCGLINRAP KLFIKLHIEW LYRILLEPKR SIKLAISVSR YLVMMLKS
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