| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2962 |
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| Symbol | |
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| ID | 5610619 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3588993 |
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| End bp | 3590573 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933902 |
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| Product | beta-lactamase domain-containing protein |
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| Protein accession | YP_001474697 |
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| Protein GI | 157376097 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.29569 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.463279 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTGCA AACAGGCTGT AGAGATAATC CATCACGGTG CGGTCAATGG TGTCACAGGC
TCCTGCCATC AGCTCGTAAT CAATGAAAAA AGCAGTCTAC TTATCGACTG TGGTCTGTTT
CAGGGAGCAG AAACAGCCGG AAGCTCGAAT GCTGAACAGT TAAAAATAGC ATTCGATATT
GGCAGTATCA CAGCACTCTT AGTCACACAC TGCCATATCG ATCATGTGGG TCGTATTCCC
TACCTTTTGG CAGCCGGATT TGACCAACCT ATATTTGCCA CTACCGCAAC AGCTGCGCTG
CTGCCTATGG TCATCGAAGA TGCTATCAGG GTTGGTGTCA CTAAAGATAA GAGACTTATC
AAGCTGTATC TGAAAAAGTT GAAGGAATTA CTCGTCCCTA TCGAGTATAA CCACTGGTTT
TCCCTTGAAG TAAACCGTAC TAAATCAGAT AAAACCGCTG ATAAAACTAA CACTCAAGGC
TTTAGCAAGG CTAAGGCAAA ATTTAAACCT GCCGGTCACA TTCTTGGTTC GGCCTACATA
GAGATAGAAC TCAGCAGTCC AAAGACAGAT AAACAGAATC CCAAAACGGT AAACAAACAT
AGAGTCGTCT TTTCCGGCGA TCTGGGCGCA ACCTATACGC CACTCCTTGC CAGCCCCAAG
AGTCCCTATA GAGCGGATAC CTTAATCATC GAGTCCACCT ATGGCGACAG AAATCACCAG
GGACGTAAGA CTCGAACGCA AAGCCTGCGA AAAGTGATAG AAAAAGCCGT ATCAGACAAT
GGCGTGGTAC TCATTCCCGC CTTTAGCATA GGACGAACAC AAGAGCTTTT ATATGAACTC
GAACAGATCA TTTATCAACA GCGCAAGCTT TCCGCTAACC GCTCCGGTGA CAAGTATCCT
GACACCGCTA TCAAACAAGA GCACAAGCAA GGGAGCAATA ACCTGGCTGG CCAGCAAAAA
AATAGCGAGA TGTGGCAATC TCAAATGTGG AATAGCATTG AAATCATCGT CGACTCGCCA
CTTGCGGCGA ACTTCACAGA AAAATACATT GAGTTCAAAG AGCTTTGGGA CAAGGAAGCC
AGACGGAAAC TAAAACAGCA TAGACACCCA CTCGACTTCG ACCAACTCTA TACCGTCGAC
AGCCATGATG AACATCTATC TACGGTAGAG TATCTATCTA AAAGAGGAAA ACCAGCCATC
GTCATCGCCG CAAGCGGCAT GTGCAGTGGC GGGAGGATAA TGAATTACCT GCAGCAGTTT
ATCGATGAAC CGACTGCCGA CATTCTATTT GTGGGATATC AGGCACGGGG AACGCCAGGA
AGAGATATTC AGACCTACGG CCCTAAGGGA GGTTATGTCT ATCTGGAGGG AGATAAGCGT
GAGATAAAAG CCGGCGTGCA CACCATCAGC GGCTACTCGG CCCATGCAGA TCAGAATAAC
CTCATCAACT TCGTCAAACG TATGCACCAT AAGCCTGAGC ATATCCGCAT AGTCCATGGC
GATGATGAGG CTAAAGAAGC ATTAGCGGTA GAGTATAAGA AGCTTTTACC CGACACTAAA
ATCGAGATAG GGAGAGACTA G
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| Protein sequence | MACKQAVEII HHGAVNGVTG SCHQLVINEK SSLLIDCGLF QGAETAGSSN AEQLKIAFDI
GSITALLVTH CHIDHVGRIP YLLAAGFDQP IFATTATAAL LPMVIEDAIR VGVTKDKRLI
KLYLKKLKEL LVPIEYNHWF SLEVNRTKSD KTADKTNTQG FSKAKAKFKP AGHILGSAYI
EIELSSPKTD KQNPKTVNKH RVVFSGDLGA TYTPLLASPK SPYRADTLII ESTYGDRNHQ
GRKTRTQSLR KVIEKAVSDN GVVLIPAFSI GRTQELLYEL EQIIYQQRKL SANRSGDKYP
DTAIKQEHKQ GSNNLAGQQK NSEMWQSQMW NSIEIIVDSP LAANFTEKYI EFKELWDKEA
RRKLKQHRHP LDFDQLYTVD SHDEHLSTVE YLSKRGKPAI VIAASGMCSG GRIMNYLQQF
IDEPTADILF VGYQARGTPG RDIQTYGPKG GYVYLEGDKR EIKAGVHTIS GYSAHADQNN
LINFVKRMHH KPEHIRIVHG DDEAKEALAV EYKKLLPDTK IEIGRD
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