| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2952 |
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| Symbol | |
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| ID | 5610686 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3576695 |
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| End bp | 3578212 |
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| Gene Length | 1518 bp |
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| Protein Length | 505 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933892 |
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| Product | nucleotidyl transferase |
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| Protein accession | YP_001474687 |
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| Protein GI | 157376087 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1208] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGCCA TAATTTTTGC CAATAGACTC GGAGATGAGC TCACTCCTCT GAATCATTAC
TACTGCCCCA CCTTGCTCCC CGTAGGCAAC AAGGCTGTCA TTGACTATAC GTTAGAGGAT
ATCGCTTCAT CAGGCATCAC GCAGGTCAAA CTGGTTATCT CTCCCCAGGC AAAAGAGATT
GAGCAACATT TGGGGTCGGG TAAAAAGTGG GGAGTTGAAA TTGAGTACTT CCTGAGTAAG
CCAGAGGAGG AGACCTCGGC CGTGTTAAAA CGCCTCTCAC TCGATACGCA AGATAAGTTA
CTGCTTGTCA GGGGAGATAT ATTCCGTTCG CCATCGATTA TGCAGTTTAT CGAGTTCTCA
AAAGAGTTCC CGGACAACTT TGTTCAAGCC AAGATGGCCA ACCAGAATGC GGGGATGATG
TTATTACCGG CAGCCCTCCC CCACATCGCC GATCTTAATT GGCCCCTGAC TCAGCAAGAC
AATGAAGAAG CCGTTGTCAC CTTGGTTCTT CATGGACATT GCTGCAGGCT GGACAGTATC
CAATCATATA TGGATACCAA CCTAAGCCTG GCAGCCAACG AATTTCCTTC ACTAACTCCT
ATGGAGCGCA GTTACAACTC AGCCAACCCC GAGCAAGACT TTTATGTTGG CGCAAAGGCA
CGAACAGGAC AGTTAAACGA TCAACAGGGA TGGGGGATCC TTGGGGAAAA CGCTTGGATA
GATCCCAGCG TCACCATGAA AAACTGTATT TTGGTCGGCA ATGATTGCCA GGTAGATAAA
GGTTCAATAC TGAATAACTG CCTGGTGTTA CCCCATACCT ACGTTGGCGA AGGCTTAGAG
GTAAAGGACA GTATTTTGTG TAAGAACCTG CTGATAAATG TAAGGACCGA GGGCGTCATA
GAGATAGACG ATCAAGCTCT GATAGGCTCT TGCAAAGTGG CAGTGAAAGG GGGCACAGAT
AAAACGGGTT TAATCACGCG ATTTTTACTC TTCATTTTAC TTACTATGAG TTTACCTTTA
TGGCCTCTGT TACAGGCGGT TTCATTCATC AACAGCTACG GGGTAAAGAA TAGCGACAAT
AATAAGAGCG AATCACCAAA AGATTCGCTA TCCGAACCGG CATTAGGAGC AAGGATAACA
CAGAGCTACA AAGATAATCT GGGGCATACT TTCCAAACAT GGAAGTGGAA CATATCCCCA
ATGATATTGG CACTAATTCC TCAACTGTAT TACGTCATCA GTGGCAGATT AGATCTCTTT
GGATCCTCCC CGCAAGTCAG TTATTCCCAC GGGCAAACAA CAGACCGCTT GGGGGTATTT
GGCCCCGTGC AACTCCTTCT CGATGAATCG GCTCCACAAG AGGAAAGAGC CCTGTTAGCG
CTTGAATTTG AAGCTAATAA TCACAGCACA AAATACCTTT CACTTATTTG GTGCTCCTTG
CGAGTGCACA GCCAGTCCCT TGGATTCAAC CATAGAGGCT CAAAACACCG TGGCTCAATG
AGTGAATTTG AGTCGTAG
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| Protein sequence | MQAIIFANRL GDELTPLNHY YCPTLLPVGN KAVIDYTLED IASSGITQVK LVISPQAKEI
EQHLGSGKKW GVEIEYFLSK PEEETSAVLK RLSLDTQDKL LLVRGDIFRS PSIMQFIEFS
KEFPDNFVQA KMANQNAGMM LLPAALPHIA DLNWPLTQQD NEEAVVTLVL HGHCCRLDSI
QSYMDTNLSL AANEFPSLTP MERSYNSANP EQDFYVGAKA RTGQLNDQQG WGILGENAWI
DPSVTMKNCI LVGNDCQVDK GSILNNCLVL PHTYVGEGLE VKDSILCKNL LINVRTEGVI
EIDDQALIGS CKVAVKGGTD KTGLITRFLL FILLTMSLPL WPLLQAVSFI NSYGVKNSDN
NKSESPKDSL SEPALGARIT QSYKDNLGHT FQTWKWNISP MILALIPQLY YVISGRLDLF
GSSPQVSYSH GQTTDRLGVF GPVQLLLDES APQEERALLA LEFEANNHST KYLSLIWCSL
RVHSQSLGFN HRGSKHRGSM SEFES
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