| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2950 |
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| Symbol | |
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| ID | 5610673 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3572897 |
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| End bp | 3573940 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933890 |
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| Product | glycosyl transferase family protein |
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| Protein accession | YP_001474685 |
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| Protein GI | 157376085 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0463] Glycosyltransferases involved in cell wall biogenesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.32753 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCCTA AAGTATCTGT AGTTATGCCT ATCTATAACG TTCAACACTT TGTCAAACAG
GCAATTAACT CTGTGTTAGC TCAAACCTTC ACAGATTTTG AACTCATTCT CGTCAATGAT
TGCTCAACCG ATAAGAGCCT TGAGATCAGT CGCACAATAC TCGACCACAG GATCCGTGTC
GTCAATCACG TCACCAACAA AGGACTCGCC GCGGCACGTA ACACAGGAAT TCGCCATGCC
ATCGGGCGAT ACGTCGCCTT TATCGACTCC GACGATATGT GGCATGCCGA CAAGCTTAAG
ATGCATGTCG AGCATCTGAA TAAGTCACCG CAAGTGGGAA TAAGCTTCTC TCGCTCAAGC
TTTATGAACC ATAAGGGCAA ACTGATCCAC TTCTTTCAGA TGCCACAATT AACAGGGATC
ACCGCAGCGC ATTTACTATG CAGAAACCCC GTTGGTAACG GTTCGGCTCC GGTGATCCGC
CGGGAAACAC TCAACGATAT TCGTTTCCAG CCACTGGATC ACGCTGAACA CTACAGCTGT
TACTTCGATG AGAAATTTCG TCAATCAGAA GATATAGAGT GCTGGTTACG AATCATAGCG
ACAACGAATT GGAAGATGGA GGGGATCCCG GCGCCACTGA CCTTCTACCG TCTTAACCAA
GAGGGGCTCT CATCAAATAT CATGAAGCAG CTCGCCTCGT GGGAGCAGAT GATCGATAAG
GCCAGACTAT TCGCACCCAA GTTACTCAAG AAAAATGAGC AGAGTGCCAG GGCCTATCAG
CTCAGATACC TGGCTCGCCA ATCTATTCGC AATGGGCAAG GTAAGGCTGC GATTAAACTG
ATTAACAAGG CGCTAAGCGT ATCACCATCG ATTATGCTCG ATGAAACAGG CAGAACCTGT
GTCACCTTAA CCGCCGCCTA TCTGCTCTGG CTGCTCCCAT CATCACTGTA TAAGGTGTGT
GAAAACATAG GCCAGTTTGG TATGGGGCAC ATCCAAAAGA TGCGAATAAG CAGAGATGGC
GTTAAATCGT CGCTAATATT GTAA
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| Protein sequence | MTPKVSVVMP IYNVQHFVKQ AINSVLAQTF TDFELILVND CSTDKSLEIS RTILDHRIRV
VNHVTNKGLA AARNTGIRHA IGRYVAFIDS DDMWHADKLK MHVEHLNKSP QVGISFSRSS
FMNHKGKLIH FFQMPQLTGI TAAHLLCRNP VGNGSAPVIR RETLNDIRFQ PLDHAEHYSC
YFDEKFRQSE DIECWLRIIA TTNWKMEGIP APLTFYRLNQ EGLSSNIMKQ LASWEQMIDK
ARLFAPKLLK KNEQSARAYQ LRYLARQSIR NGQGKAAIKL INKALSVSPS IMLDETGRTC
VTLTAAYLLW LLPSSLYKVC ENIGQFGMGH IQKMRISRDG VKSSLIL
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