Gene Ssed_2947 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2947 
Symbol 
ID5610670 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3567842 
End bp3569251 
Gene Length1410 bp 
Protein Length469 aa 
Translation table11 
GC content48% 
IMG OID640933887 
Producthypothetical protein 
Protein accessionYP_001474682 
Protein GI157376082 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.390818 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAACA AACATCACCC AAGCCAGCTT CTCTGGTTAA AAAGAGCCGC GATTAAGGGC 
AGCAGCTTGC CTGTTAATGC GCGTCGCTGG GTGTATATAA AAACAGCATT AGCGGCTCTA
ACACTGATCT GGACACTAGC GATCATTGCG ATAGCGAATA CTCCCGCACG TTTTGTCAGT
AAGTGGACAC TTATCCTGCC GGGCGCCGGA GCAGGAGCAT TAGTCAGCTT AGACAGTATA
GGTCAGGCCA CCAGCACAAG CAGCTCTCCC TACTTAAGCT CGGCCATCGA CCCCAGAGAG
AATTATAAGG CACTGTCGAT GAGCCAGATC TTACTCGATG CCGCCGCCAA AACCGTAAAG
CTGACACCTC AGGCCATGGG AAAGCCCAAG TTAAAGCTGC CAAATCAAAC GGGATTGATG
CAGTTCAATA TCAGTAGCAC TACGGCACAA GAGGCACAGG ATAAGGCGTG GGCGCACTAC
CACAGTTTAC AGGCACTGCT GTCTCAACTC AGAGAAGATG AGATTAATCA AAGAGAGAAT
GGGATCAAGA TGGGCATCGA TGGGTTTGCC ACTAAGGTGA GCCAGAGTCA GGCAAAGATA
CTCAACTTTC AATCTCAGAT AGGACTGGTA TCACTGGATC AATTTAAGGA GCTTGCGCTC
ACAATAGAGA GGCTCAGACA CAGTAAGGTT AATATGGTCT CTAAGTTACA GGGCGTAATA
GCAAGCCAGA AAATGCTGGA AATGCACCTG TCCCTTAACG CCCAACAGGC TGCCGATCTG
CTCAAGCTGA AGAATGATCA GTTGTACCAG CAGCTACTGG TGATTTATAC AGAATCGACC
ACTACTCTCG CAGAATATTC AGGGCGTTAT GGTAAGAAGC ACCCCCAGAT CATGACCCAA
ACTCAGCAAC AACAAGCACT TTTTCGCGCA TTAAGAAAAC GCTGCAAAAT TCTATTAGGT
TATCAGGACG ACACCCTTAT GTTGATGCTG TCTGCCGATG ATATCGATGG CCGGGCACAG
TTAATGAAAC AACTGCTCTC TGTGACTACT GAGGCGGAAG GGTTAAGCCA CGAGCTCCGC
TCCCTTACAG AACAGATAAA CGCCTGGGAC ACTCGTCTGG AGGACAGTAA TGATGACGCC
GCAAAACTTG AAGATCTTCA CCGGGAACAT CAGGTCGCCA CGGCCGTATT TACCTCGGCG
CTAGCTAAAA TGGATGTAGG AAAAGCCGAT ATCTACTCGG CCTACCCTCT ACTTCAACTA
CTCGCTCCAC CAAGTTTGCC ATTGAAGGCC AACACTATGG CAAGGGTTTT AACCTTACTG
GGCGGAATTG TAGCTTCCAT TTTTTCACTA GCGGGTTTAA GCATCATGTG GATCAGAAAA
CCGATACTGC AGAAGATCTT AACGACTTGA
 
Protein sequence
MKNKHHPSQL LWLKRAAIKG SSLPVNARRW VYIKTALAAL TLIWTLAIIA IANTPARFVS 
KWTLILPGAG AGALVSLDSI GQATSTSSSP YLSSAIDPRE NYKALSMSQI LLDAAAKTVK
LTPQAMGKPK LKLPNQTGLM QFNISSTTAQ EAQDKAWAHY HSLQALLSQL REDEINQREN
GIKMGIDGFA TKVSQSQAKI LNFQSQIGLV SLDQFKELAL TIERLRHSKV NMVSKLQGVI
ASQKMLEMHL SLNAQQAADL LKLKNDQLYQ QLLVIYTEST TTLAEYSGRY GKKHPQIMTQ
TQQQQALFRA LRKRCKILLG YQDDTLMLML SADDIDGRAQ LMKQLLSVTT EAEGLSHELR
SLTEQINAWD TRLEDSNDDA AKLEDLHREH QVATAVFTSA LAKMDVGKAD IYSAYPLLQL
LAPPSLPLKA NTMARVLTLL GGIVASIFSL AGLSIMWIRK PILQKILTT