Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2932 |
Symbol | |
ID | 5610902 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 3549121 |
End bp | 3550134 |
Gene Length | 1014 bp |
Protein Length | 337 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640933872 |
Product | UDP-glucose 4-epimerase |
Protein accession | YP_001474667 |
Protein GI | 157376067 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1087] UDP-glucose 4-epimerase |
TIGRFAM ID | [TIGR01179] UDP-glucose-4-epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000357428 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCATAT TAGTCACAGG TGGTGCGGGA TATATTGGTA GCCATACGGT GGTTGAGCTT TTAAACGCAG GCCAGAAAGT TGTCATCGTC GATAACCTTG TCAATTCGAG TATCGAAGCT CTAAATAGAG TAGAGAGTAT CACCGGAAAG TCGGTGACCT TCTATCAGGG AGATGTACTC AACAAGGCAC TGCTTCAGAA GGTATTCAGC GATCACCAGA TCCATTCCGT CATCCATTTT GCAGGCCTTA AAGCCGTAGG TGAATCAGTC GCCCAGCCAC TGAAATATTA TGAAAATAAT GTCACCGGCA CTCTGGTGCT CTGTGAAGTC ATGGCCGAAC ACGGCATCAA GAACTTAGTA TTCAGCTCTT CGGCTACCGT TTATGGCGAT CCTGCAAGTT TGCCTATTAC AGAAGATTTC CCTACGGGCG CAACTAACCC TTATGGCCAG TCAAAACTCA TGGTTGAACA GATCTTACAT GATCTTAATC ATGCCGATCC CAGCTGGAAT ATTGCACGCT TGCGTTACTT TAACCCGGTA GGCGCTCATG TGAGTGGCCG CATCGGCGAA GACCCTAACG ATATTCCCAA TAACCTGATG CCCTTTATTG CTCAGGTGGC CGTGGGTAAA AGAGAAAAAT TGAGCGTATT TGGTGGAGAT TACCCCACTC ATGATGGCAC GGGTGTACGT GATTATATTC ATGTTGTCGA TCTCGCTACC GGTCATTTGA GAGCCCTTGA AAAACTCAAT ACAAAACCAG GTTTGGTCAC CTATAACTTA GGAACAGGTC AAGGATATAG TGTTCTCGAT ATGATCAAGG CTTTCGAGAA AGCCTGCGGA AAGTCGATTC CATATCAAAT TGTCGAGCGC CGTCCCGGAG ACATTGCCGC CTGTTACGCA GCGCCTCAAA AAGCGAAAAC CGAATTAGGC TGGCAAGCAA CTCATACGCT GGAAGATATG GCAAATAGTA GCTGGAAATG GCAATCGACT AACCCTAATG GGTATTCGAG CTAA
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Protein sequence | MTILVTGGAG YIGSHTVVEL LNAGQKVVIV DNLVNSSIEA LNRVESITGK SVTFYQGDVL NKALLQKVFS DHQIHSVIHF AGLKAVGESV AQPLKYYENN VTGTLVLCEV MAEHGIKNLV FSSSATVYGD PASLPITEDF PTGATNPYGQ SKLMVEQILH DLNHADPSWN IARLRYFNPV GAHVSGRIGE DPNDIPNNLM PFIAQVAVGK REKLSVFGGD YPTHDGTGVR DYIHVVDLAT GHLRALEKLN TKPGLVTYNL GTGQGYSVLD MIKAFEKACG KSIPYQIVER RPGDIAACYA APQKAKTELG WQATHTLEDM ANSSWKWQST NPNGYSS
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