Gene Ssed_2932 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2932 
Symbol 
ID5610902 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3549121 
End bp3550134 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content47% 
IMG OID640933872 
ProductUDP-glucose 4-epimerase 
Protein accessionYP_001474667 
Protein GI157376067 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1087] UDP-glucose 4-epimerase 
TIGRFAM ID[TIGR01179] UDP-glucose-4-epimerase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000357428 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCATAT TAGTCACAGG TGGTGCGGGA TATATTGGTA GCCATACGGT GGTTGAGCTT 
TTAAACGCAG GCCAGAAAGT TGTCATCGTC GATAACCTTG TCAATTCGAG TATCGAAGCT
CTAAATAGAG TAGAGAGTAT CACCGGAAAG TCGGTGACCT TCTATCAGGG AGATGTACTC
AACAAGGCAC TGCTTCAGAA GGTATTCAGC GATCACCAGA TCCATTCCGT CATCCATTTT
GCAGGCCTTA AAGCCGTAGG TGAATCAGTC GCCCAGCCAC TGAAATATTA TGAAAATAAT
GTCACCGGCA CTCTGGTGCT CTGTGAAGTC ATGGCCGAAC ACGGCATCAA GAACTTAGTA
TTCAGCTCTT CGGCTACCGT TTATGGCGAT CCTGCAAGTT TGCCTATTAC AGAAGATTTC
CCTACGGGCG CAACTAACCC TTATGGCCAG TCAAAACTCA TGGTTGAACA GATCTTACAT
GATCTTAATC ATGCCGATCC CAGCTGGAAT ATTGCACGCT TGCGTTACTT TAACCCGGTA
GGCGCTCATG TGAGTGGCCG CATCGGCGAA GACCCTAACG ATATTCCCAA TAACCTGATG
CCCTTTATTG CTCAGGTGGC CGTGGGTAAA AGAGAAAAAT TGAGCGTATT TGGTGGAGAT
TACCCCACTC ATGATGGCAC GGGTGTACGT GATTATATTC ATGTTGTCGA TCTCGCTACC
GGTCATTTGA GAGCCCTTGA AAAACTCAAT ACAAAACCAG GTTTGGTCAC CTATAACTTA
GGAACAGGTC AAGGATATAG TGTTCTCGAT ATGATCAAGG CTTTCGAGAA AGCCTGCGGA
AAGTCGATTC CATATCAAAT TGTCGAGCGC CGTCCCGGAG ACATTGCCGC CTGTTACGCA
GCGCCTCAAA AAGCGAAAAC CGAATTAGGC TGGCAAGCAA CTCATACGCT GGAAGATATG
GCAAATAGTA GCTGGAAATG GCAATCGACT AACCCTAATG GGTATTCGAG CTAA
 
Protein sequence
MTILVTGGAG YIGSHTVVEL LNAGQKVVIV DNLVNSSIEA LNRVESITGK SVTFYQGDVL 
NKALLQKVFS DHQIHSVIHF AGLKAVGESV AQPLKYYENN VTGTLVLCEV MAEHGIKNLV
FSSSATVYGD PASLPITEDF PTGATNPYGQ SKLMVEQILH DLNHADPSWN IARLRYFNPV
GAHVSGRIGE DPNDIPNNLM PFIAQVAVGK REKLSVFGGD YPTHDGTGVR DYIHVVDLAT
GHLRALEKLN TKPGLVTYNL GTGQGYSVLD MIKAFEKACG KSIPYQIVER RPGDIAACYA
APQKAKTELG WQATHTLEDM ANSSWKWQST NPNGYSS