Gene Ssed_2911 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2911 
Symbol 
ID5610023 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3520824 
End bp3522665 
Gene Length1842 bp 
Protein Length613 aa 
Translation table11 
GC content43% 
IMG OID640933851 
ProductATPase domain-containing protein 
Protein accessionYP_001474646 
Protein GI157376046 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCATTTA CAATAAAAAC AAAAAAATAT CTTCTCATCT CTATCATTTT ACTCACTGGT 
CTTGCCGTTA TATTGAAGGC GACTCATTGG TTATATCTTA ATAAGGGATA CGCTCAAACG
GCGCAAAAAT CTAAGCAGCA GATGACTGAG CTCGTCAACT TTCTCGACGG TTCTCTGTCT
CGATATGAGA GCATTCCACA TGTATTATCC ACCAATCCAT TATTAAAAAA TGCACTTTTA
GATCAAGAAA ATCCAGGTAG CATTCAAACG CTTAACCTCT ATTTAGAAGA GATCCAACAT
ATCACCGAAT CTCTGGACAT CTATCTAATT GATGCTTCTG GCGTTGCGAT ATCGGCCAGT
AACTGGCAGA AAAGTTACTC TTTTATTGGC AAAGACTTCT CCTTTCGTCC TTATTATCAA
GAAGCTATTT CAGGGAGGCT CGGTCGTTAC TATGCAGTGG GTACCTCATC TAATAAGCGT
GGCTTTTACT TTTCATACCC TATCTATAAT CAATCGATTA TTGTAGGCGC AATCGTTGTC
AAAGTGGATA TAACTGAAAT TGAACAGCAG AGCACAGGCA TTGCCAGAGC CGGTGGTTAT
GAGTTTGCCA TTACTGACCC CGATAACATT ATTTTTCTCT CAAGCATCAA TAGCTGGCGG
TTAAATTCAT TATCGCCCAT AGGGAAAGAG CGGCAATATG CGATAAATGA ATCAAAACGA
TACGCTAACA GAGTCATTAA TGAATTAGCG ATTAAGCCCT CTTACGATGA AAACGCCTCG
GCAGCGCAAA GGATATACGC CATAAACTCC AACAAAGGGG TATTTGACTA TATGGAGATC
CATCAGTCGA TGGTAAAGGC CGGATGGAAT ATCCATATTA TGGCGCCGCT CTCCCCCACT
TATAGCGCCT TACCTGCTTT TATGATGCTA TATGCCACTG TGTATCTATT ATTGGCATTA
GGGGCTTTAT TCGCCTTCGA GAAGCGTAAG AGTTCATTAC GAATACAGCA GGCCAATGAC
CAGCTCGAAC AACGTGTACA GGCCAGAACA CAAGCCCTAC AAGCCAGTAA TCAAAAGCTA
AACGAGACAC AAGACGAGTT AATACAGGCG GCTAAGCTCA CCGTCATAGG CAGTTTGTCT
GCGAGCATAA ACCACGAGAT AAATCAGCCT CTGGCCGCAA TAAGAAGCTA TGCACAAAAT
ACTCAGACAT TGGTAAGCAG AAACCAACTA GAGCAGGTTT CCGACAATAT AAATACCATT
ATTTCACTGA CAGACAGGCT CGCCGCCATC GTCGGCCAAT TTAAAAGTTT CACCCGCAAA
AGTCAGGGAG AGGACAGCGC AACTAACATC AATCAATGTA TTCAAGATTC GCTCACCATT
ATTCAACCAG AGATTGATAA GCAAGGCATT GAACTTATTC TCTCATCGAA TGAAATCAAA
TGTGAGGTCT GGGGAGACAA TATCAGGCTA CAACAAGTAC TCGTTAACCT AATGAGCAAT
GCCATCGTCG CAATGAAGCA TTGCATTCAT AAAAAACTAA TCGTGACTGC AGAGCAAGGC
ACAATGCTGC GTATTCGCAT TCAAGACAGC GGCCCGGGCG TACGAGAGAG TCAGATGGAA
AAGATATTCG AACCTTACTA TACCACCAGC GAACGCCAAG GTTTAGGTCT GGGTCTATCC
ATTTCAAGGC GCATTGTCGA ATCGATGCAA GGCAATATCA CGGTTTCCAA TGCTCACCTT
AGTGGTGCCA TATTTGAAAT CACCTTACCC ATTTATCTTC ATGGGACATC ACACAAATCA
GCTAACGCTC AGCAGGGAGA GTTTTCCGAT GAACCTCAAT AA
 
Protein sequence
MAFTIKTKKY LLISIILLTG LAVILKATHW LYLNKGYAQT AQKSKQQMTE LVNFLDGSLS 
RYESIPHVLS TNPLLKNALL DQENPGSIQT LNLYLEEIQH ITESLDIYLI DASGVAISAS
NWQKSYSFIG KDFSFRPYYQ EAISGRLGRY YAVGTSSNKR GFYFSYPIYN QSIIVGAIVV
KVDITEIEQQ STGIARAGGY EFAITDPDNI IFLSSINSWR LNSLSPIGKE RQYAINESKR
YANRVINELA IKPSYDENAS AAQRIYAINS NKGVFDYMEI HQSMVKAGWN IHIMAPLSPT
YSALPAFMML YATVYLLLAL GALFAFEKRK SSLRIQQAND QLEQRVQART QALQASNQKL
NETQDELIQA AKLTVIGSLS ASINHEINQP LAAIRSYAQN TQTLVSRNQL EQVSDNINTI
ISLTDRLAAI VGQFKSFTRK SQGEDSATNI NQCIQDSLTI IQPEIDKQGI ELILSSNEIK
CEVWGDNIRL QQVLVNLMSN AIVAMKHCIH KKLIVTAEQG TMLRIRIQDS GPGVRESQME
KIFEPYYTTS ERQGLGLGLS ISRRIVESMQ GNITVSNAHL SGAIFEITLP IYLHGTSHKS
ANAQQGEFSD EPQ