| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2911 |
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| Symbol | |
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| ID | 5610023 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3520824 |
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| End bp | 3522665 |
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| Gene Length | 1842 bp |
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| Protein Length | 613 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640933851 |
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| Product | ATPase domain-containing protein |
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| Protein accession | YP_001474646 |
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| Protein GI | 157376046 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCATTTA CAATAAAAAC AAAAAAATAT CTTCTCATCT CTATCATTTT ACTCACTGGT
CTTGCCGTTA TATTGAAGGC GACTCATTGG TTATATCTTA ATAAGGGATA CGCTCAAACG
GCGCAAAAAT CTAAGCAGCA GATGACTGAG CTCGTCAACT TTCTCGACGG TTCTCTGTCT
CGATATGAGA GCATTCCACA TGTATTATCC ACCAATCCAT TATTAAAAAA TGCACTTTTA
GATCAAGAAA ATCCAGGTAG CATTCAAACG CTTAACCTCT ATTTAGAAGA GATCCAACAT
ATCACCGAAT CTCTGGACAT CTATCTAATT GATGCTTCTG GCGTTGCGAT ATCGGCCAGT
AACTGGCAGA AAAGTTACTC TTTTATTGGC AAAGACTTCT CCTTTCGTCC TTATTATCAA
GAAGCTATTT CAGGGAGGCT CGGTCGTTAC TATGCAGTGG GTACCTCATC TAATAAGCGT
GGCTTTTACT TTTCATACCC TATCTATAAT CAATCGATTA TTGTAGGCGC AATCGTTGTC
AAAGTGGATA TAACTGAAAT TGAACAGCAG AGCACAGGCA TTGCCAGAGC CGGTGGTTAT
GAGTTTGCCA TTACTGACCC CGATAACATT ATTTTTCTCT CAAGCATCAA TAGCTGGCGG
TTAAATTCAT TATCGCCCAT AGGGAAAGAG CGGCAATATG CGATAAATGA ATCAAAACGA
TACGCTAACA GAGTCATTAA TGAATTAGCG ATTAAGCCCT CTTACGATGA AAACGCCTCG
GCAGCGCAAA GGATATACGC CATAAACTCC AACAAAGGGG TATTTGACTA TATGGAGATC
CATCAGTCGA TGGTAAAGGC CGGATGGAAT ATCCATATTA TGGCGCCGCT CTCCCCCACT
TATAGCGCCT TACCTGCTTT TATGATGCTA TATGCCACTG TGTATCTATT ATTGGCATTA
GGGGCTTTAT TCGCCTTCGA GAAGCGTAAG AGTTCATTAC GAATACAGCA GGCCAATGAC
CAGCTCGAAC AACGTGTACA GGCCAGAACA CAAGCCCTAC AAGCCAGTAA TCAAAAGCTA
AACGAGACAC AAGACGAGTT AATACAGGCG GCTAAGCTCA CCGTCATAGG CAGTTTGTCT
GCGAGCATAA ACCACGAGAT AAATCAGCCT CTGGCCGCAA TAAGAAGCTA TGCACAAAAT
ACTCAGACAT TGGTAAGCAG AAACCAACTA GAGCAGGTTT CCGACAATAT AAATACCATT
ATTTCACTGA CAGACAGGCT CGCCGCCATC GTCGGCCAAT TTAAAAGTTT CACCCGCAAA
AGTCAGGGAG AGGACAGCGC AACTAACATC AATCAATGTA TTCAAGATTC GCTCACCATT
ATTCAACCAG AGATTGATAA GCAAGGCATT GAACTTATTC TCTCATCGAA TGAAATCAAA
TGTGAGGTCT GGGGAGACAA TATCAGGCTA CAACAAGTAC TCGTTAACCT AATGAGCAAT
GCCATCGTCG CAATGAAGCA TTGCATTCAT AAAAAACTAA TCGTGACTGC AGAGCAAGGC
ACAATGCTGC GTATTCGCAT TCAAGACAGC GGCCCGGGCG TACGAGAGAG TCAGATGGAA
AAGATATTCG AACCTTACTA TACCACCAGC GAACGCCAAG GTTTAGGTCT GGGTCTATCC
ATTTCAAGGC GCATTGTCGA ATCGATGCAA GGCAATATCA CGGTTTCCAA TGCTCACCTT
AGTGGTGCCA TATTTGAAAT CACCTTACCC ATTTATCTTC ATGGGACATC ACACAAATCA
GCTAACGCTC AGCAGGGAGA GTTTTCCGAT GAACCTCAAT AA
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| Protein sequence | MAFTIKTKKY LLISIILLTG LAVILKATHW LYLNKGYAQT AQKSKQQMTE LVNFLDGSLS
RYESIPHVLS TNPLLKNALL DQENPGSIQT LNLYLEEIQH ITESLDIYLI DASGVAISAS
NWQKSYSFIG KDFSFRPYYQ EAISGRLGRY YAVGTSSNKR GFYFSYPIYN QSIIVGAIVV
KVDITEIEQQ STGIARAGGY EFAITDPDNI IFLSSINSWR LNSLSPIGKE RQYAINESKR
YANRVINELA IKPSYDENAS AAQRIYAINS NKGVFDYMEI HQSMVKAGWN IHIMAPLSPT
YSALPAFMML YATVYLLLAL GALFAFEKRK SSLRIQQAND QLEQRVQART QALQASNQKL
NETQDELIQA AKLTVIGSLS ASINHEINQP LAAIRSYAQN TQTLVSRNQL EQVSDNINTI
ISLTDRLAAI VGQFKSFTRK SQGEDSATNI NQCIQDSLTI IQPEIDKQGI ELILSSNEIK
CEVWGDNIRL QQVLVNLMSN AIVAMKHCIH KKLIVTAEQG TMLRIRIQDS GPGVRESQME
KIFEPYYTTS ERQGLGLGLS ISRRIVESMQ GNITVSNAHL SGAIFEITLP IYLHGTSHKS
ANAQQGEFSD EPQ
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