| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2910 |
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| Symbol | |
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| ID | 5610022 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3519311 |
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| End bp | 3520708 |
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| Gene Length | 1398 bp |
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| Protein Length | 465 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933850 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001474645 |
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| Protein GI | 157376045 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGATAG CCACCCTATT CATCACCCTA CTCGTTTGTA TGATCTTGGG CATGCCAATC
GCCATCGCGC TTGGATTTTC AAGCATGCTG ACCATACTGT TATTTTCAGA CGATTCGCTA
GCGTCCGTAG CCCTTAAGCT CTACGAATCG ACATCAGAAC ATTACACCTT GCTCGCCATC
CCTTTCTTCA TTCTTTCTTC AGCCTTTTTA TCTACCGGTG GTGTAGCCAG AAGAATAATC
GATTTTGCCA TGGACACTGT TGGACACATT CGGGGTGGAC TTGCCATGGC CTCCGTTATG
GCCTGTATGT TATTCGCGGC CGTATCCGGA TCATCCCCCG CTACCGTCGC CGCCATTGGC
TCTATCGTTA TTGTCGGTAT GGTTCGCGCA GGTTACCCTG AAAAATTTGC AGCAGGGGTC
ATTACCACAT CAGGTACCTT AGGGATATTA ATTCCGCCAT CGATTGTAAT GCTTGTTTAC
GCTGCGGCGA CCGAGGTGTC GGCGGCTAGA ATGTTTATGG CGGGCCTTGT TCCCGGGTTG
ATGATGGGCT TTTTGCTTAT GCTAGCCATA TACATAGTTG CCAGAGTAAA GAACTTACCC
TCCAGACCTT TTCCTGGAGT CAAAGTGCTG GCAATATCCA GCTCAAAGGC GATGGGCGGT
TTAGCGCTCA TCCTTATCGT TCTCGGTTCT ATCTATGGTG GTGTGGCTAG TCCGACAGAA
GCTGCAGCGG TGGCTTGTGT ATACGCTTAT TTTATCGCTG TGTTTGGATA TCGGGACATC
GGCCCCCTAA GAGATGTAGC CTGGAAGAAT AAACAAGAAT CTTTGGTTGG TGCGGCAATC
CGAAACATTG GATATATGTT ACTCGCGGTA GTTAAAACCC CTATCGACAA AGAGATACGC
CACGTAGTCC GGGATGGGGC AAAAGTCAGT ATCATGCTGC TTTTCATTAT TGCCAACGCC
ATGCTATTTG CCCATGTTCT TACGACTGAA CGTATACCTC ATATCATCGC AGAAGCCATC
GTCGGCATGG GTCTGCCAGC ATGGGGATTT CTGGTTATCG TTAACCTGTT ACTCCTGGCT
GCCGGCAACT TCATGGAACC ATCTGCCATT TTACTTATCA TGGCCCCCAT CCTGTTTCCC
ATTGCAACCC AACTGGGTAT AGACCCGATC CATCTGGGAA TTATCATGGT TGTCAATATG
GAGATAGGTA TGCTGACGCC ACCAGTAGGA CTCAATCTGT TTGTCACCGC GGGGATCACA
GGAAAAAGTA TGGGTTGGGT GATACAGTCA TGTGTTCCCT GGCTATTACT CCTGCTCTTC
TTCCTGATCC TTATCACTTA TGTTCCGCAA ATATCACTAT TTTTGCCCGA GTACATAGAT
AAATTGAATG GATATTAA
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| Protein sequence | MTIATLFITL LVCMILGMPI AIALGFSSML TILLFSDDSL ASVALKLYES TSEHYTLLAI
PFFILSSAFL STGGVARRII DFAMDTVGHI RGGLAMASVM ACMLFAAVSG SSPATVAAIG
SIVIVGMVRA GYPEKFAAGV ITTSGTLGIL IPPSIVMLVY AAATEVSAAR MFMAGLVPGL
MMGFLLMLAI YIVARVKNLP SRPFPGVKVL AISSSKAMGG LALILIVLGS IYGGVASPTE
AAAVACVYAY FIAVFGYRDI GPLRDVAWKN KQESLVGAAI RNIGYMLLAV VKTPIDKEIR
HVVRDGAKVS IMLLFIIANA MLFAHVLTTE RIPHIIAEAI VGMGLPAWGF LVIVNLLLLA
AGNFMEPSAI LLIMAPILFP IATQLGIDPI HLGIIMVVNM EIGMLTPPVG LNLFVTAGIT
GKSMGWVIQS CVPWLLLLLF FLILITYVPQ ISLFLPEYID KLNGY
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