| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2909 |
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| Symbol | |
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| ID | 5610021 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3518607 |
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| End bp | 3519311 |
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| Gene Length | 705 bp |
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| Protein Length | 234 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640933849 |
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| Product | tripartite ATP-independent periplasmic transporter, DctQ component |
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| Protein accession | YP_001474644 |
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| Protein GI | 157376044 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATAAAAC GAATATTTTC TCATCTAGAG GAGGGGATTC TCAATCTGTT GATCACCTCC
ATGACTTTTT TGGTCTTTAT CGAAGTGATC GCACGATTTT TCTTTAATAC CGGTTTTCTA
TGGATACAGG AGCTAACTCT GACCTTATGT GCCTGGTTTG TGCTTTTCGG CATGTCCTAC
GGAGTCAAAG TCGGCGCCCA TATTGGTGTG GATGCTTTCG TCGTTAAACT GCCAAAGCAA
GCCAGAAAAA TAGTAGCTCT GCTGGCCGTA ACCATATGCA TCGCTTATTG CGTGATGTTC
TTGAAAGGGA GTTGGGATTA TCTGAACAAG ATGTATGAGA TCGGGATCCC TATGGAAGAC
ATAGACTTCC CTCACCAGCT GTTCAGTAAT ATGGACCCGG ATCTTGTATG GGAGACCCTT
CGTATCGATG TAGAGGAACC GGCTGTCCCC CTTTGGATAT CACAAAGTAT ATTGATAATT
GGGTTTGGAC TACTTAGTTT CCGCTTTATT GAACTTTTGG TTGCCATTTT AAGGAACCAA
AAACTCGGAT TTACATTAGC CGATGAAGCC GAAGAGAGCC TGCACTTAGC CGATGCCGTT
AAAGAGGCAA TACAGCAAGA GACATCTGTA ACACCAACAT CCCATGACAC AAACAAAAAA
ATGGATGTTT CATCTAAAAG CCAAAATGAA AAGGATGACA AATAA
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| Protein sequence | MIKRIFSHLE EGILNLLITS MTFLVFIEVI ARFFFNTGFL WIQELTLTLC AWFVLFGMSY
GVKVGAHIGV DAFVVKLPKQ ARKIVALLAV TICIAYCVMF LKGSWDYLNK MYEIGIPMED
IDFPHQLFSN MDPDLVWETL RIDVEEPAVP LWISQSILII GFGLLSFRFI ELLVAILRNQ
KLGFTLADEA EESLHLADAV KEAIQQETSV TPTSHDTNKK MDVSSKSQNE KDDK
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