| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2908 |
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| Symbol | |
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| ID | 5610138 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3517496 |
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| End bp | 3518530 |
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| Gene Length | 1035 bp |
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| Protein Length | 344 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640933848 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_001474643 |
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| Protein GI | 157376043 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0709842 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTACTA AACTTATACC TACAAGTACT TCTGAACTTA CACGCCCACT GAAAAAGCTT
TTAAAAGCGA CGGTACTCGC AGGCTTGCTA ACCAGCAGCA TTCAAGCTTA CGCTGAGCCA
ATACAGATTA AATTTTCTCA CGTCGTAGCA GAAAACACTC CCAAAGGGCA GATGGCGCTA
AAATTCAAAG AGCTTGTCGA ACAACGTTTA CCGGGTGAAT ACCAAGTGAA TGTGTTCCCT
AACTCTCAGT TATTTGGTGA CAATAATGAA GTCGCGGCAC TTCTGCTTAA CGATGTACAG
TTTGTCGCTC CCTCACTTTC TAAGTTTGAA CGCTATACCA AAAAACTGCA GATCTTCGAC
CTGCCGTTTC TATTTGAAAA TATGGAGTCT GTAGACAGGT TTCAACAGAG TGACTCAGGG
CAAAAACTGT TAAATTCGAT GAAACGTAAG GGAATTGTAG GACTCGGATA CCTGCACAAT
GGAATGAAAC AACTCTCAGC CAGTAGCCCT TTGATTCTAC CTTCAGATGC TAACGGGAAG
AAATTTAGAA TTATGGCATC GGATGTTTTA GCCGCACAGT TTCAAGCTGT CGATGCTATC
CCGGTCAAAA AGCCATTTTC TGAAGTATTT ACCTTGCTGC AAACCCGCGC TATCGATGGC
CAAGAGAACA CTTGGTCAAA TATTTATTCA AAGAAATTCT TCGAAGTTCA AAGTCATATA
ACAGAGAGTA ATCATGGCGT ACTCGATTAT ATGGTCGTGA CATCCTCAAC ATTCTGGAAA
AGCCTGCCAG CAGACAAGCG TGTCGTGATC AAATCATCTC TGGACGAAGC TTTAGCCCAC
GGTAACCAAA TCGCTGCCGC TAAGGTCAAT AAAGACAAGG CAACAATTGA AGCCTCAAAA
CGCTCAGACA TAATCCAGTT AACTGCAGCT CAACGTCTGG AGTGGGTCTC TTCGATGAAA
CCTGTTTGGC GCCAATTTGA AGCAAAGATA GGGAAAGACC TTATCGACGC AGCCGTCGCT
TCAAATAAGC TTTAA
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| Protein sequence | MTTKLIPTST SELTRPLKKL LKATVLAGLL TSSIQAYAEP IQIKFSHVVA ENTPKGQMAL
KFKELVEQRL PGEYQVNVFP NSQLFGDNNE VAALLLNDVQ FVAPSLSKFE RYTKKLQIFD
LPFLFENMES VDRFQQSDSG QKLLNSMKRK GIVGLGYLHN GMKQLSASSP LILPSDANGK
KFRIMASDVL AAQFQAVDAI PVKKPFSEVF TLLQTRAIDG QENTWSNIYS KKFFEVQSHI
TESNHGVLDY MVVTSSTFWK SLPADKRVVI KSSLDEALAH GNQIAAAKVN KDKATIEASK
RSDIIQLTAA QRLEWVSSMK PVWRQFEAKI GKDLIDAAVA SNKL
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