| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2905 |
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| Symbol | |
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| ID | 5610135 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3509445 |
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| End bp | 3511274 |
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| Gene Length | 1830 bp |
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| Protein Length | 609 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640933824 |
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| Product | ABC transporter-related protein |
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| Protein accession | YP_001474640 |
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| Protein GI | 157376040 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.564374 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.291067 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAAAC GATTTGAATC TTGGGTCAAT GCCCTGCCCT ATGAAGAACC GGTACAACCT
CCGAAAGGGA TATATGCATT TTGTCGGCAT TACACCCGAG GATTTGAACT TCCTCTTATC
CTCATGTCGA TTTTAACCGC GACTTTAGCC ATTTTAGAGG TATCACTATT TGGTTTCATG
GGACAGTTGG TCGATATGCT CATCGCTAAC GACCCTCAAA CCTTATTTGA GAAAGAAGGT
CAGAAGCTAA TTGGAATGAC TGTTTTGGTA TTAGTCATCA TCCCCACTCT GGTTCTTCTG
CATGCCTTAA TTGTATATCA AGGACTGCTT GGCAATTATC CTATGTCAAT CCGCTGGTTA
GCGCATAGGT ATCTGCTCAA ACAGAGTGTC TCTTTCTACC AGAATGATTT TGCAGGAAGA
ATTGCGACCA AGGTCATGCA GACATCACTG GCAGTCAGGG AAACCGTGAC AAAGCTATTA
GATGTACTGG TATATATTTT GGTTTATTTC ACTTCGATGG TCGTCATGAT TGCGAATGCG
GATCTAAGAC TAATGGTCCC TATGCTGATC TGGCTGGGGT TATACATAAG CCTGCAATTC
ATGTTTTTAC CTAAGCTAAA GAAGGTCTCT ACTGAGCAAG CCGACGCCCG CTCAACCATG
ACCGGGCGGA TTGTAGACAG CTATACCAAT ATCACAACGG TAAAGCTGTT TTCCCACACA
CAAAAAGAAG CTGAATATGC TCGAGGCAGC ATGAAAGTGT TTCTCAATAC TGTTTATCGG
CAAATGCGAC TGGTTACAGG CATCAATGTC AGCGTGCAGA TAATCAATTA CCTTCTCGCA
TTTACTATAG CTGCGGTTTC TATTTGGTTA TGGACGAGCA GCGCAATTAC CGTAGGCGCT
ATCGCCATCG CAATCAGCCT GTCGCTTCGT CTAAATGGTA TGTCGCAATG GATCATGTGG
GAAATCAGCT CATTGTTTGA AAACATCGGC ACCGTGACCG ATGGTATGAA CACCTTATCT
AAACCCACTG AAATTGAAGA TTGTATCGAT GCAAAGCCAA TCACGGTTAC CCAAGGATGT
ATCGATTTTG CCGATGTAAG TTTTCATTAC GGCGAAAGCA GCGGGATCAT AGATAATCTC
AACCTGAATA TCAAAGCCGG CGAAAAAGTT GGTCTGGTCG GTCGCTCCGG AGCAGGAAAG
TCGACGCTGG TGAACTTGTT AATGCGCTTC TATGATGTCG AACAAGGTTC GATTCAAATA
GACAAGCAAG ATATTAAAAA CGTACAACAA GACTCCTTGC GCGCGCATAT AGGCATGGTG
ACACAAGACA CCTCTCTTCT TCACCGCTCC GTTCGTGAAA ATATTCTTTA CGGCAATCCT
GATGCAAGTG AAGATGAGTT ACTCAAAGCG ATAAAACATG CTCAAGCCTA TGAGTTTATT
CAAACTCTTA GTGACCCGGA AGGTAATCGA GGTTTGGATG CACAAGTTGG AGAACGCGGC
GTCAAGCTAT CCGGCGGTCA ACGTCAACGT ATCGCCATCG CCCGTGTCTT GCTGAAAAAT
GCCCCTATTC TCCTGCTCGA TGAGGCCACA TCAGCCCTGG ATTCAGAAGT TGAAGCGGCC
ATTCAAGAGA GTTTGTATCA ACTAATGGAA GGTAAGACTG TGATTGCTAT TGCCCACCGC
TTATCGACAA TTGCAGCAAT GGACAGGCTT ATTGTCATCG ATGAGGGGAA AATTGTCGAA
CAGGGCTCTC ATCATGAGTT AATTCAATCC GGTGGTATCT ATGCTCAACT ATGGGCGCAT
CAAACTGGAG GTTTTTTGGG GGTCGATTAA
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| Protein sequence | MFKRFESWVN ALPYEEPVQP PKGIYAFCRH YTRGFELPLI LMSILTATLA ILEVSLFGFM
GQLVDMLIAN DPQTLFEKEG QKLIGMTVLV LVIIPTLVLL HALIVYQGLL GNYPMSIRWL
AHRYLLKQSV SFYQNDFAGR IATKVMQTSL AVRETVTKLL DVLVYILVYF TSMVVMIANA
DLRLMVPMLI WLGLYISLQF MFLPKLKKVS TEQADARSTM TGRIVDSYTN ITTVKLFSHT
QKEAEYARGS MKVFLNTVYR QMRLVTGINV SVQIINYLLA FTIAAVSIWL WTSSAITVGA
IAIAISLSLR LNGMSQWIMW EISSLFENIG TVTDGMNTLS KPTEIEDCID AKPITVTQGC
IDFADVSFHY GESSGIIDNL NLNIKAGEKV GLVGRSGAGK STLVNLLMRF YDVEQGSIQI
DKQDIKNVQQ DSLRAHIGMV TQDTSLLHRS VRENILYGNP DASEDELLKA IKHAQAYEFI
QTLSDPEGNR GLDAQVGERG VKLSGGQRQR IAIARVLLKN APILLLDEAT SALDSEVEAA
IQESLYQLME GKTVIAIAHR LSTIAAMDRL IVIDEGKIVE QGSHHELIQS GGIYAQLWAH
QTGGFLGVD
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