| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2904 |
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| Symbol | |
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| ID | 5609971 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3507757 |
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| End bp | 3509265 |
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| Gene Length | 1509 bp |
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| Protein Length | 502 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640933823 |
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| Product | AraC family transcriptional regulator |
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| Protein accession | YP_001474639 |
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| Protein GI | 157376039 |
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| COG category | [F] Nucleotide transport and metabolism
[L] Replication, recombination and repair |
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| COG ID | [COG0122] 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
[COG2169] Adenosine deaminase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.190431 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCATC ACCTCGAAAA CTTAAGCGTT GAATCTTGCC GTAAAGCGAG ACTATCAAAA
GATCCCCGTT TCGATGGCCA GTTTTTTGTT GGTGTGATCA CGACGGGAAT TTTTTGTCGG
CCTATATGTC CTGCTGTATC GCCACAAGAG AAAAATGTCA GGTATTTTGA CTCTGCAATT
CGCGCCGTTA ATGCTGGATT AAGGCCCTGC CTGCGCTGCC GCCCCGATAG CGCCCCAGAT
TCATTTGCAT GGAAAGGGAC ACAAACAACA ATAGAGCGCG CGTTGAGATT AATTGATGCT
GGTGTTATGT CTGGTGATAA CGGATTGAGT ATAGAGGCTC TGTCTGAAAG ATTGGGGATC
GGTAGCCGAT ATTTACGTCA GTTATTCAAT AAGCATTTGG GGACATCGCC TAAGCAATAT
GCGCAATTTC GTCAACTTAT GTTTGCAAAG CAATTATTGC ATCAAACAGA TCTACCTGTG
GTTCAAGTCG GCTTGGCTGC AGGCTACACC AGCATCAGGC GTTTTAATGA AGTATTCAAA
GATACATTAC AGTTAACGCC AACAGAGCTA AGAAAAAAGA GAAGTAATAC ACAACCACTC
GCGGTGAATG ATAATGGCTC AGGTAGAGGA CTCAGTTTAA GCTTACAATT ATCATATCGG
CCTCCACTAA ATTGGAGTCA TCTGTCTGAA TTTTATCAAT TGAGAATGGT TGATGGAATG
GAGTGGCTGA ATGACTTAAG CTATGGACGT ACTTTTCAAT TAGGCTCAGC TAAAGGCTTT
TTTGAAGCAG TTCACCATCC AGAAAAGAAT AGATTCAAGG TCACTATCCA TCTGTCTGAT
ACTCAAGACA TAGTACAGCT TAAAGATATT GTCATGCAGA TCCGCAGGTT ATTAGACCTC
GATGCTGATA TGAATAAGAT ACAGAGCTCG CTCGCATCAA TCTCTCTTAT AAGCAACCAG
ATAAAAGAGG GGCTCAGGTT ACCTGGTACC TGGTCTGCAT TCGAAGCTGG CTGTAGGGCG
ATATTAGGGC AGCAGGTCAG CGTCACTCAA GCCACTAAAT TGCTTAATTG CATGGTAAAG
GCCAATGGAG AGGAGTTGAG TCTGTCGGGT CGGACGCTTC GTATGTTTCC TACGCCAGAT
AAGCTTGCAA AAGCCAATTT GGATGAGCTT AAGATGCCTG GCGCAAGGAA AGCCGCGATC
AATGCTTTTA GTTTATATGT GGCCACCAAC CCGGATGCAG ATCTTGATGA ATGGTTAACC
ATTAAAGGGA TAGGTCCCTG GACCGTAGCC TATGCCAAAA TGCGCGGGTT AAGCGACCCC
AACATTTTGT TATGTACCGA TCTGATCGTT AAAAAGAAGG TGCTGAAGAT GTATGAGTTA
GATAGGCTGT CAGTGGACGC TGCGGAAACG GGTAAGCCAG TGAATTATGG TGCATTGACA
GAGTCACTTC GTCAGCAGGC AACGCCCTGG GGCAGTTATT TAACCTTTCA ACTATGGAAC
CTGACATGA
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| Protein sequence | MDHHLENLSV ESCRKARLSK DPRFDGQFFV GVITTGIFCR PICPAVSPQE KNVRYFDSAI
RAVNAGLRPC LRCRPDSAPD SFAWKGTQTT IERALRLIDA GVMSGDNGLS IEALSERLGI
GSRYLRQLFN KHLGTSPKQY AQFRQLMFAK QLLHQTDLPV VQVGLAAGYT SIRRFNEVFK
DTLQLTPTEL RKKRSNTQPL AVNDNGSGRG LSLSLQLSYR PPLNWSHLSE FYQLRMVDGM
EWLNDLSYGR TFQLGSAKGF FEAVHHPEKN RFKVTIHLSD TQDIVQLKDI VMQIRRLLDL
DADMNKIQSS LASISLISNQ IKEGLRLPGT WSAFEAGCRA ILGQQVSVTQ ATKLLNCMVK
ANGEELSLSG RTLRMFPTPD KLAKANLDEL KMPGARKAAI NAFSLYVATN PDADLDEWLT
IKGIGPWTVA YAKMRGLSDP NILLCTDLIV KKKVLKMYEL DRLSVDAAET GKPVNYGALT
ESLRQQATPW GSYLTFQLWN LT
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