| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2902 |
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| Symbol | |
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| ID | 5609969 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3505708 |
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| End bp | 3507006 |
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| Gene Length | 1299 bp |
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| Protein Length | 432 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933821 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001474637 |
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| Protein GI | 157376037 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0424079 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACAAG CTCACTCTTC ACAAACATCA CAGAACGCCA CCTTCGAACA ACTAGGATTA
ATCCCTGAAT TACTGGCTCG TTTAACTGAA CTTGAGTATG TGACTCCTAC ACTGGTTCAG
ACAGGAACTA TCGCTGCGGT TTTGGAGGGT AAAGATGTGT TAGCGGGCGC TATCACAGGT
TCTGGTAAGA CCGCTGCGTT TGCATTGCCA TTAATACAAA GACTGTTATC AAAACAATCC
ACCTCTGTGA AGGGAAACCT GATTGGGACA TTAGTGCTTG TTCCTACTCG TGAGCTGGCT
CAACAAGTTG CCGAAAGCTT TAAGAGTTAT GCGAAACTGA TTAAACCGAG AGTAAAGGTA
GAGGCTGTGT TCGGTGGTGT TTCAGCCAAT ACCCAAATGC TTGCGTTGAG AGGCGGGGCG
GATGTTCTTG TGGCGACTCC AGGGCGCCTG CTTGACCTAA TTTCGAGCAA TGCAGTGAAG
CTTGGGCAAG TGACCTCTTT AGTGCTCGAC GAAGCGGACC GTATGTTAAG TCTGGGCTTC
GAAGAAGAGT TAACGGAGAT TCTGGCCAAA CTACCTAAAC ATAAGCAAAC TTTACTCTTT
TCGGCTACCT TTCCCGAAGA AGTTAAGATA CTGACTGACA AGTTGTTATC GTCTCCTGTA
GAGGTTCAGC TTCAAAGCGA AGAGAAGAGT ACACTGACAC AACAGGTTTA TACGGTTAAC
CGGAATAGTA AGACAGCTCT GCTGGCACAT CTGATTAAAG AGAATGATTG GCGTCAAGTC
TTGGTTTTTG CCAGTGCCAA AAATACCTGT AACCGTTTGG AACAAAAGCT GGAAAAACTG
GGCATTGCGG CGCAGGTTTT TCATAGCGAT AAGGCTCAGG GGGCAAGAAC CCGAGTATTA
GAAGGATTCA AAAGTGGTGA GATCCGGGTG CTAATCGCCA CAGATATTGC CGCGCGTGGT
ATAGATATTG AAAAGCTTCC GGTTGTGATT AATTACGAGT TGCCGAGAAG TCCTGCCGAT
TATATGCATC GGATCGGTCG AAGTGGACGT GCCGGAGAGG CGGGTCTGGC GTTATCTTTA
ATTTCCCATG ATGAATACCA CCATTTCAAA ATCATAGAGA AAAAGAATAA GTTTAGGTTA
GAGAGAGAGC AAGTTGTTGG TTTTGAAGCC TCTGAAGAAG CGCCGCTTGA TTGCCCATCC
AGAGAGATAA AACCTATGGC AGCACCCGAA GGTATGGGTA AGAAAAAGCG AAAAAAAGTC
CCTAAGGCCA ATGCCGAACT GTGGGCCAAA AAGCCCTGA
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| Protein sequence | MTQAHSSQTS QNATFEQLGL IPELLARLTE LEYVTPTLVQ TGTIAAVLEG KDVLAGAITG
SGKTAAFALP LIQRLLSKQS TSVKGNLIGT LVLVPTRELA QQVAESFKSY AKLIKPRVKV
EAVFGGVSAN TQMLALRGGA DVLVATPGRL LDLISSNAVK LGQVTSLVLD EADRMLSLGF
EEELTEILAK LPKHKQTLLF SATFPEEVKI LTDKLLSSPV EVQLQSEEKS TLTQQVYTVN
RNSKTALLAH LIKENDWRQV LVFASAKNTC NRLEQKLEKL GIAAQVFHSD KAQGARTRVL
EGFKSGEIRV LIATDIAARG IDIEKLPVVI NYELPRSPAD YMHRIGRSGR AGEAGLALSL
ISHDEYHHFK IIEKKNKFRL EREQVVGFEA SEEAPLDCPS REIKPMAAPE GMGKKKRKKV
PKANAELWAK KP
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