| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2900 |
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| Symbol | |
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| ID | 5613816 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3503470 |
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| End bp | 3504993 |
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| Gene Length | 1524 bp |
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| Protein Length | 507 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933819 |
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| Product | phospholipase D/transphosphatidylase |
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| Protein accession | YP_001474635 |
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| Protein GI | 157376035 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1502] Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0104537 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGTA GAGTCATTGC CTGTTGGATC GCTATTTTTT GTCTGGGGTG CTTATCCGCC
TGCGGCTCTT TACCCGATTT TGGTGATAAA GAGCCAAGCT ATAAATTACC AGTTTCATCA
AATGCCAATC TGGTTCAATT TACCGCCCCC CTCATCGTTA ACCATCCTGC CCAAACCGGT
GTCGCCCCTT TGACTAATGG GCTTGACGCG TTTATAGCAA GACTGGCCAT CATTACCGCG
GCAAGTACAA GCGTAGACTT ACAGTATTAT ATTTATCGAC CGGATGAGAC GGGTAAGCTA
CTCGTTTGGC ATCTGCTCGA TGCGGCTGAA CGAGGGGTCA GAGTCCGTAT CTTGCTAGAC
GACTTGACGA CCAAAGAGTT AGATCATGGT TTGATGTTGC TCTCGATGCA CCCCAATATT
CATATCCGCC TTTTTAACCC TTCATCTTCG AGAGTGTATA GAGGGCTCGA GTTTATTACC
GGTTTTTCGC GCATGAATCA TCGCATGCAT AATAAGTCTT TGACCGTGGA TAATTCGGCG
ACCATTGTCG GTGGACGAAA TATTGGCAAC GAATATTTCT CTAATAATGA AGATGTTGAT
TTTGGTGATT TTGATCTGCT TGCGATAGGG GAGGCGGTTG ACGAGGTTTC TAATCAGTTC
GATCTGTATT GGAATGCCAA GGTCACAGTG CCTATTGAAA CGTTATCGGA CAAAAGTTTT
ACCGAAGAGG AGCTGAACGA TGCCGATGAG TCCTATCGCG CCGAACGCTT AGCCTTTGAG
TCGAGTGAGT ATCTGGGGCG TTTGGAGTTG AGCCTCTTTT TAGAAGAGCT CAGGGAACAA
AAACTGAAGT GGTACTGGGG CAATGCTGAA GTGGTGTATG ACCCACCGCA GAAGGCTCAG
AAAAAAGATG AACAGTTGTG GCTACTTTCT GATTTGTCTA AATTTCTAGA AAGTGCAGAA
GAGGAGGTGA TGATTGTTTC TCCCTACTTT GTGCCAACGG CGCAAGGCAC TCAAGATCTG
GTCGCGGCAT CCCAAGGTGG TTTAACAATC ACTGTGGTCA CCAATAGTCT GGCGGCTACC
GATGTGCTGG CCGTTCACGC CGGGTATCAG GGATACCGCA AGGCACTACT CGATGGTGGG
GTTAAAATCT TTGAAGTGAG AGTCGATCCT GAGCATAAGC CCTCTGGATG GATGGGAAGT
TCACGCACAA GCCTCCATGC TAAAACCTTT ATCTTAGACA GAAAATCAAC CTTTGTTGGT
TCATTTAACT TCGATCCCAG ATCGGCCTGG ATAAATACCG AAATGGGGAT GATATTTCAT
CAGACTGAAT TTGCTAATGG CGTTGTCACT GGGATCGAGG CAGGCCTCAA AGAGTCTGCA
TTTAGATTAG ATATTGAAGA GGGAGAACTT GTATGGTTTG ATGATTTGAA GGGCGTGAAG
CTTCATTCTG AACCCGGTGC GGGGTTCTGG CGTAAGTTTA TGGCCGATTT CATTTCGCTA
TTTCCTTTTG AATCACAACT TTAA
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| Protein sequence | MKSRVIACWI AIFCLGCLSA CGSLPDFGDK EPSYKLPVSS NANLVQFTAP LIVNHPAQTG
VAPLTNGLDA FIARLAIITA ASTSVDLQYY IYRPDETGKL LVWHLLDAAE RGVRVRILLD
DLTTKELDHG LMLLSMHPNI HIRLFNPSSS RVYRGLEFIT GFSRMNHRMH NKSLTVDNSA
TIVGGRNIGN EYFSNNEDVD FGDFDLLAIG EAVDEVSNQF DLYWNAKVTV PIETLSDKSF
TEEELNDADE SYRAERLAFE SSEYLGRLEL SLFLEELREQ KLKWYWGNAE VVYDPPQKAQ
KKDEQLWLLS DLSKFLESAE EEVMIVSPYF VPTAQGTQDL VAASQGGLTI TVVTNSLAAT
DVLAVHAGYQ GYRKALLDGG VKIFEVRVDP EHKPSGWMGS SRTSLHAKTF ILDRKSTFVG
SFNFDPRSAW INTEMGMIFH QTEFANGVVT GIEAGLKESA FRLDIEEGEL VWFDDLKGVK
LHSEPGAGFW RKFMADFISL FPFESQL
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