Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2892 |
Symbol | tgt |
ID | 5611244 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3495727 |
End bp | 3496860 |
Gene Length | 1134 bp |
Protein Length | 377 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640933811 |
Product | queuine tRNA-ribosyltransferase |
Protein accession | YP_001474627 |
Protein GI | 157376027 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0343] Queuine/archaeosine tRNA-ribosyltransferase |
TIGRFAM ID | [TIGR00430] tRNA-guanine transglycosylase, queuosine-34-forming [TIGR00449] tRNA-guanine transglycosylases, various specificities |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.103545 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.000645764 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAATTTG AATTAGATAC AACTCAAGGT CGCGCTCGTC GTGGCCGTTT AGTCTTTGAG CGAGGCACGG TAGAAACGCC TGCATTTATG CCTGTTGGTA CCTACGGTAC CGTAAAGGGG ATGACGCCTG AAGAGGTTCG TGCAACCGGT GCAGATATCC TTCTGGGGAA CACATTCCAT TTGTGGCTTC GTCCTGGCGA AGAGATCATG CGTAAACATG GTGATCTTCA TGACTTCATG AACTGGCAAA GACCTATTTT GACAGACTCT GGCGGATTCC AGGTATTCAG CCTGGGTGAT ATTCGAAAAA TCACCGAAGA GGGGGTTCAT TTCCGCTCGC CGATTAATGG TGAAAAAATC TTTTTAGATC CTGAAAAGTC TATGCAGATC CAGAACTCTC TTGGCTCTGA TGTCGTGATG ATTTTCGATG AATGTACACC GTATCCAGCG ACAGAAGACG AAGCACGTAA ATCGATGCAG ATGTCTCTTC GTTGGGCACA ACGTTCACGC GATGAGTTTG ATAAGCTTGA AAACCCTAAT TCTCTGTTTG GTATCATTCA GGGTGGGGTT TATGAAGATC TGCGTGATGA AAGTCTTAAA GGGCTTGTCG ATATTGGATT TGACGGTTAT GCCGTTGGTG GTTTGGCTGT GGGTGAGCCT AAAGCTGACA TGCATCGCAT TCTTGAGCAT ACATGTCCTC AAATCCCAAC AGATAAACCG CGTTACTTGA TGGGGGTCGG TAAGCCGGAA GATTTAGTTG AAGGTGTACG TCGCGGCGTC GACATGTTCG ATTGTGTCAT GCCTACACGT AATGCTCGAA ATGGTCATCT GTTTACCACT GAAGGCGTTA TTAAGATACG TAATGCACGT CATCGTGATG ACACTTCACC ACTCGATGAT AAATGTGATT GTTATACCTG TAAGAACTAC TCTCGGGCAT ACCTGTACCA TTTAGATCGT TGTAATGAAA TTTTAGGTGC TCGTTTAAAC ACCATTCATA ACCTTAGGTA TTACCAAAAG TTGATGGAAG GTTTGCGCGG TGCGATCGAG ACAGGTACAT TAGACGCCTT CGTTGAGGAG TTCTATACCA GTCAAGGACG CGAAGTCCCT GAAGTTCCTG AATTAACCGA TTAA
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Protein sequence | MKFELDTTQG RARRGRLVFE RGTVETPAFM PVGTYGTVKG MTPEEVRATG ADILLGNTFH LWLRPGEEIM RKHGDLHDFM NWQRPILTDS GGFQVFSLGD IRKITEEGVH FRSPINGEKI FLDPEKSMQI QNSLGSDVVM IFDECTPYPA TEDEARKSMQ MSLRWAQRSR DEFDKLENPN SLFGIIQGGV YEDLRDESLK GLVDIGFDGY AVGGLAVGEP KADMHRILEH TCPQIPTDKP RYLMGVGKPE DLVEGVRRGV DMFDCVMPTR NARNGHLFTT EGVIKIRNAR HRDDTSPLDD KCDCYTCKNY SRAYLYHLDR CNEILGARLN TIHNLRYYQK LMEGLRGAIE TGTLDAFVEE FYTSQGREVP EVPELTD
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