Gene Ssed_2890 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2890 
SymbolsecD 
ID5611242 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3493497 
End bp3495347 
Gene Length1851 bp 
Protein Length616 aa 
Translation table11 
GC content47% 
IMG OID640933809 
Productpreprotein translocase subunit SecD 
Protein accessionYP_001474625 
Protein GI157376025 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.703354 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000286958 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGTTAAATA AATATCCAAT GTGGAAAAAC CTGATGGTGA TAATCATTAT CGCCGTTGGT 
TCTTTCTATG CAATTCCAAA CCTCTTCGGG GAAGACTATG CGGTTCAGGT AGTGGCTTCT
CGTGGTGCAG AGGTTACGGC AACGACACAG TCGACCGTAA ATGATGTTCT TGCAAGTAAG
AACATTACAG TAAAGCGTTC AGAGCTTGAA AATGGTCAAC TATTGGTTCG TGTGGCTAAT
GGCGATCAGC AACTGTTAGC TAAAGAAGCG ATTGCAGAGT CACTAGGTGA TAAATACATC
GTCGCCTTAA ACTTAGCTCC GGCGACACCT GACTGGCTTG AGTCATTGGG TGGAAGCCCA
ATGAAACTGG GTCTCGATCT TCGTGGTGGT GTGCACTTCC TGATGGAAGT GGATATGGGT
GAAGCCGTTC GTAAGATGAC AGAAGCTAAA ATTTCTGACT TCAGAACCGA TCTTCGTGGC
GAGAAAATTC GTTATGCCGG TATTCGTAAC AGTGCTAAAG GCATTGAGAT TAAGTTCCGT
GATGCTGAGA ATCTAGCGAA GGCTGAACGT TTCCTCAAGA CTCGTGGCAA CGATATGGTG
TTTACCGATA TCTCTTCGGG CGACAGCTAT TTCTTAATGG CTAACTTGAG CGAAGCTTAT
CTTAAGCAGA TCAAAGAGGA AGCACTACAG CAGAACATCA CAACGATCCG TAATCGTGTG
AACGAGCTGG GTGTGGCAGA ACCTGTTGTA CAGCGTCAAG GTGCAGAGCG TATTATCGTC
GAGCTTCCTG GTGTTCAGGA TACGGCACGT GCAAAAGATA TCTTAGGCGC AACGGCCTCT
ATTGAATTCC ACATGGTGGA TGAAAAAGCC GACGCGGCTG CCGCTGCAAG TGGTAGAGTC
TCGCCAAGTT CTCAAGTATA CAATCGCCGT CAGGGCGGAC AAGTTGTACT GCATAAGGCT
GTAATGTTGA CCGGTGATCA TATTCAAGGT GCTCAACCGA GCTTCGATGA ATACAGTCGT
CCACAGGTGA GCATTAACCT TGATTCAAAA GGTGGGTCTA TCTTCTCGAA TGTAACTAAG
GATAACATCG GTAAGCCGAT GGCAACCTTG TTCATCGAGT ATAAAGACAA CGGTGATAAG
AATCCTGATG GTAGTGTGAA GATGCAAAAG ATCGAGGAAG TTATCTCGGT TGCAACGATT
CAAGCCCGTC TTGGTCGTAA CTTCGTGATC ACTGGCCTTG AGCACTCAGA AGCGCAAAAC
TTAGCCCTTC TACTTCGTGC GGGTGCCTTG ATTGCACCTG TGACTATCGT AGAAGAGCGT
ACCATTGGTC CAAGCCTTGG TGCTGAAAAC ATCCAAAATG GTGTTCAAGC GATGATCTGG
GGTATGGCTG TTGTACTTAT TTTTATGCTG GTTTATTACC GTGGTTTCGG CCTAATTGCC
AACTTAGCGT TGACGGCGAA CCTTGTGATG GTTGTTGGTG TTATGTCGAT GATCCCAGGT
GCCGTACTTA CGCTTCCAGG TATTGCGGGC ATGGTACTGA CTGTCGGTAT GGCGGTTGAT
GGTAACGTGC TTATTTACGA GCGTATTCGT GAAGAGTTAC GCAACGGCCG CAGCGTACAG
CAAGCGATTC ATGAAGGTTA CGGTAACGCA TTTTCAACTA TTGCCGATGC GAACATCACT
ACATTTATGA CTGCACTTAT CCTGTTTGCT GTAGGTACGG GTGCTGTTAA AGGGTTTGCA
GTAACGCTTA TGATCGGTAT CGCAACCTCT ATGTTTACTG CAATCGTGGG TACTCGCTCA
ATAGTTAACG CTATGTGGGG TGGTAAACGC GTGAAGAAAC TGTCTATATA A
 
Protein sequence
MLNKYPMWKN LMVIIIIAVG SFYAIPNLFG EDYAVQVVAS RGAEVTATTQ STVNDVLASK 
NITVKRSELE NGQLLVRVAN GDQQLLAKEA IAESLGDKYI VALNLAPATP DWLESLGGSP
MKLGLDLRGG VHFLMEVDMG EAVRKMTEAK ISDFRTDLRG EKIRYAGIRN SAKGIEIKFR
DAENLAKAER FLKTRGNDMV FTDISSGDSY FLMANLSEAY LKQIKEEALQ QNITTIRNRV
NELGVAEPVV QRQGAERIIV ELPGVQDTAR AKDILGATAS IEFHMVDEKA DAAAAASGRV
SPSSQVYNRR QGGQVVLHKA VMLTGDHIQG AQPSFDEYSR PQVSINLDSK GGSIFSNVTK
DNIGKPMATL FIEYKDNGDK NPDGSVKMQK IEEVISVATI QARLGRNFVI TGLEHSEAQN
LALLLRAGAL IAPVTIVEER TIGPSLGAEN IQNGVQAMIW GMAVVLIFML VYYRGFGLIA
NLALTANLVM VVGVMSMIPG AVLTLPGIAG MVLTVGMAVD GNVLIYERIR EELRNGRSVQ
QAIHEGYGNA FSTIADANIT TFMTALILFA VGTGAVKGFA VTLMIGIATS MFTAIVGTRS
IVNAMWGGKR VKKLSI