Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2890 |
Symbol | secD |
ID | 5611242 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3493497 |
End bp | 3495347 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640933809 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001474625 |
Protein GI | 157376025 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.703354 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.000286958 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGTTAAATA AATATCCAAT GTGGAAAAAC CTGATGGTGA TAATCATTAT CGCCGTTGGT TCTTTCTATG CAATTCCAAA CCTCTTCGGG GAAGACTATG CGGTTCAGGT AGTGGCTTCT CGTGGTGCAG AGGTTACGGC AACGACACAG TCGACCGTAA ATGATGTTCT TGCAAGTAAG AACATTACAG TAAAGCGTTC AGAGCTTGAA AATGGTCAAC TATTGGTTCG TGTGGCTAAT GGCGATCAGC AACTGTTAGC TAAAGAAGCG ATTGCAGAGT CACTAGGTGA TAAATACATC GTCGCCTTAA ACTTAGCTCC GGCGACACCT GACTGGCTTG AGTCATTGGG TGGAAGCCCA ATGAAACTGG GTCTCGATCT TCGTGGTGGT GTGCACTTCC TGATGGAAGT GGATATGGGT GAAGCCGTTC GTAAGATGAC AGAAGCTAAA ATTTCTGACT TCAGAACCGA TCTTCGTGGC GAGAAAATTC GTTATGCCGG TATTCGTAAC AGTGCTAAAG GCATTGAGAT TAAGTTCCGT GATGCTGAGA ATCTAGCGAA GGCTGAACGT TTCCTCAAGA CTCGTGGCAA CGATATGGTG TTTACCGATA TCTCTTCGGG CGACAGCTAT TTCTTAATGG CTAACTTGAG CGAAGCTTAT CTTAAGCAGA TCAAAGAGGA AGCACTACAG CAGAACATCA CAACGATCCG TAATCGTGTG AACGAGCTGG GTGTGGCAGA ACCTGTTGTA CAGCGTCAAG GTGCAGAGCG TATTATCGTC GAGCTTCCTG GTGTTCAGGA TACGGCACGT GCAAAAGATA TCTTAGGCGC AACGGCCTCT ATTGAATTCC ACATGGTGGA TGAAAAAGCC GACGCGGCTG CCGCTGCAAG TGGTAGAGTC TCGCCAAGTT CTCAAGTATA CAATCGCCGT CAGGGCGGAC AAGTTGTACT GCATAAGGCT GTAATGTTGA CCGGTGATCA TATTCAAGGT GCTCAACCGA GCTTCGATGA ATACAGTCGT CCACAGGTGA GCATTAACCT TGATTCAAAA GGTGGGTCTA TCTTCTCGAA TGTAACTAAG GATAACATCG GTAAGCCGAT GGCAACCTTG TTCATCGAGT ATAAAGACAA CGGTGATAAG AATCCTGATG GTAGTGTGAA GATGCAAAAG ATCGAGGAAG TTATCTCGGT TGCAACGATT CAAGCCCGTC TTGGTCGTAA CTTCGTGATC ACTGGCCTTG AGCACTCAGA AGCGCAAAAC TTAGCCCTTC TACTTCGTGC GGGTGCCTTG ATTGCACCTG TGACTATCGT AGAAGAGCGT ACCATTGGTC CAAGCCTTGG TGCTGAAAAC ATCCAAAATG GTGTTCAAGC GATGATCTGG GGTATGGCTG TTGTACTTAT TTTTATGCTG GTTTATTACC GTGGTTTCGG CCTAATTGCC AACTTAGCGT TGACGGCGAA CCTTGTGATG GTTGTTGGTG TTATGTCGAT GATCCCAGGT GCCGTACTTA CGCTTCCAGG TATTGCGGGC ATGGTACTGA CTGTCGGTAT GGCGGTTGAT GGTAACGTGC TTATTTACGA GCGTATTCGT GAAGAGTTAC GCAACGGCCG CAGCGTACAG CAAGCGATTC ATGAAGGTTA CGGTAACGCA TTTTCAACTA TTGCCGATGC GAACATCACT ACATTTATGA CTGCACTTAT CCTGTTTGCT GTAGGTACGG GTGCTGTTAA AGGGTTTGCA GTAACGCTTA TGATCGGTAT CGCAACCTCT ATGTTTACTG CAATCGTGGG TACTCGCTCA ATAGTTAACG CTATGTGGGG TGGTAAACGC GTGAAGAAAC TGTCTATATA A
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Protein sequence | MLNKYPMWKN LMVIIIIAVG SFYAIPNLFG EDYAVQVVAS RGAEVTATTQ STVNDVLASK NITVKRSELE NGQLLVRVAN GDQQLLAKEA IAESLGDKYI VALNLAPATP DWLESLGGSP MKLGLDLRGG VHFLMEVDMG EAVRKMTEAK ISDFRTDLRG EKIRYAGIRN SAKGIEIKFR DAENLAKAER FLKTRGNDMV FTDISSGDSY FLMANLSEAY LKQIKEEALQ QNITTIRNRV NELGVAEPVV QRQGAERIIV ELPGVQDTAR AKDILGATAS IEFHMVDEKA DAAAAASGRV SPSSQVYNRR QGGQVVLHKA VMLTGDHIQG AQPSFDEYSR PQVSINLDSK GGSIFSNVTK DNIGKPMATL FIEYKDNGDK NPDGSVKMQK IEEVISVATI QARLGRNFVI TGLEHSEAQN LALLLRAGAL IAPVTIVEER TIGPSLGAEN IQNGVQAMIW GMAVVLIFML VYYRGFGLIA NLALTANLVM VVGVMSMIPG AVLTLPGIAG MVLTVGMAVD GNVLIYERIR EELRNGRSVQ QAIHEGYGNA FSTIADANIT TFMTALILFA VGTGAVKGFA VTLMIGIATS MFTAIVGTRS IVNAMWGGKR VKKLSI
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