| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2889 |
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| Symbol | secF |
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| ID | 5613104 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3492537 |
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| End bp | 3493484 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640933808 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_001474624 |
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| Protein GI | 157376024 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0000629469 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTTCAGA TTTTATCAAT AAAAGGCACG ATCAACTTCC TTCGCCATGC GGTTCCTATC
AGTATCCTCT CTTTGGTACT GGTACTTGGT TCACTAACAT CGTTAGCGAC CAATGGGATT
AACTGGGGAT TGGATTTTAC CGGTGGTACA GTCGTTGAGC TTGAGTTTTC TTCACCTTCA
GATTTAGAAG CACTACGTGC TGAACTGAGC AGTGTTGAGA CCGACGGTGC AGTGGTACAG
AACTTCGGTT CAAGCCGTGA TGTACTTGTT CGTCTCCCTG TTAAGGAAGG CGTAGCGACC
GATACTCAAG TTAGCCAGGT TATGGATGCT GCACTTAAAT TTGATCCACA AGTGGTTCAA
AAACGTGTAG AAGTCGTTGG TCCTCAGATA GGTAAAGAGC TGGCAGAACA AGGGGGCTTA
GCTGTTTTAG TCGCTCTTAT CTGTATCTTG ATCTATGTGT CATTCCGATT TGAGTGGCGT
TTAGCCTTAG GTTCTGTCGC TGCACTTGCG CATGACGTTA TCATTACTCT GGGTGTATTT
TCGCTATTGC AGCTCGACTT TGACCTTACG GTACTTGCGG GTGTCTTGAC GGTTGTGGGT
TACTCACTTA ACGATACTAT CGTAGTGTTC GACCGAATTC GTGAAAACTT CCTTAAGATA
CGTAAAGGCG AGCCTGAAGA GATTGTTAAC ACTTCAATTA CTCAAACTAT GAGTCGTACT
ATTATCACTA CGGGCACAAC ATTAGTTGTA GTAGTAGCGT TATTCCTTAA GGGCGGCACT
ATGATCCATG GCTTTGCGAC AGCATTGCTG ATGGGAATAT TTGTCGGTAC TTTCTCATCT
ATCTATGTCG CGAGTTTCCT TGCTGTTAAG CTTGGAATTA ACCGTGAGCA TATGATGCCT
GTTGAAATTG AAAAAGAGGG CGCAGATCAA GACGCGCTGA TGCCTTAA
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| Protein sequence | MFQILSIKGT INFLRHAVPI SILSLVLVLG SLTSLATNGI NWGLDFTGGT VVELEFSSPS
DLEALRAELS SVETDGAVVQ NFGSSRDVLV RLPVKEGVAT DTQVSQVMDA ALKFDPQVVQ
KRVEVVGPQI GKELAEQGGL AVLVALICIL IYVSFRFEWR LALGSVAALA HDVIITLGVF
SLLQLDFDLT VLAGVLTVVG YSLNDTIVVF DRIRENFLKI RKGEPEEIVN TSITQTMSRT
IITTGTTLVV VVALFLKGGT MIHGFATALL MGIFVGTFSS IYVASFLAVK LGINREHMMP
VEIEKEGADQ DALMP
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