| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2882 |
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| Symbol | |
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| ID | 5610223 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3485795 |
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| End bp | 3487471 |
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| Gene Length | 1677 bp |
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| Protein Length | 558 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640933801 |
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| Product | signal transduction histidine kinase, LytS |
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| Protein accession | YP_001474617 |
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| Protein GI | 157376017 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3275] Putative regulator of cell autolysis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0010106 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000000662994 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGTCTTTGA TTTTACTTTT AACCCAACAG ATGAGCCTCT ACTTAGTGCT GGTCTACCTT
GTCAGTAAGA CCCCCTTGTT CAAATTTTTT GCAGAAGCCG CGACTCGCCT GCCTCATAAG
ATATTCATCT ACCTGATCTT TTCTGGCTTT TGCATCATGG CAACCTACTT CGGTGAACAA
ACTAACGATG CCATCGCCAA CACCCGTGCC ATGGGGGCCG TTTTAGGCGG TCTGTTAGGC
GGGCCCGTTA CCGGCTTTCT GGTCGGTCTC ACAGGAGGCT TACACAGATA TAGCATGGGA
GGCTTCACCG ATGTTGCCTG TGCTATTTCT ACTACTCTCG AAGGGTTTTC GGCGGGAATG
ATCAGCCTCT ATTTACGAAG ACAAGATAAG AGTGAGCTGA TATACGCCCC TTTGTTGGTC
TGCCTGGTGA CCTTCTGTGC AGAGATGCTT CAGATGGGGG TTATTCTACT CGTCGCCCAG
CCTTTTTCCG ATGCATGGGC GTTGGTTAAA CAGATAGCCC TTCCGATGCT CTTAGTGAAC
TCTATCGGTG CAGCCCTGTT TATGAGTATG GTAAGAGATC AAAAAACCAT GTTCGACAAA
CTCTCATCCG CATTCTCAAC TCAAGCATTA AAAATTGCCG AACGCAGCGT TGGGGTGTTA
TCGAAGGGGT TCAATCAAGA AAGTAGTACC CAGGTTGCCC AGATTATTAT CGAAGAAACC
CATGTTGGAG CCGTTGCGAT AACCGATAGA GAGCATCTGT TGGCCTTTAT CGGAACAGGC
GCCGACCATC ATATTCCAGG CACTCCGATA TCATCGAAAA TAACTCAAGA TGCCATAGAT
AATAACTGTG TCATGTTTGC CGACGGAGTC AACATGGCAT ACTCCTGCTC CATCTCCCCA
CAATGTCGAC TAGGCTCCAG CTTAGTGATC CCGCTTCGAT GTGAAAATGA GGTAATTGGA
ACAATTAAAC TTTACGAGCC AAAGAACAAG CTATTTCTTA ACATAAACCG AACGCTGGGT
GAGGGAATTG GTCGATTATT ATCGAACCAG ATCTTATTCG GTCGCTTCGA ACGTCAACAA
AATCTACTCA CTCAGGCTGA GTTAAAGTTA TTGCAGGCAC AAGTTAACCC TCATTTCCTC
TTCAATGCGC TCAATACCAT CGCAGCCATC ATAAAAAGAG ATCCCTTAAA GGCAAGACAA
CTGATCCAAC AATTATCTCA ATTTTTAAGA ATTAACCTCA AACGCACCAC AGGACTCGTG
ACACTTTCGG ATGAACTTGA ACATATTGAT TCATATCTGA CCATCGAGAA AGCACGTTTT
ATCGATAAAC TAAACGTTGA GATTGATATC CCTGATCTAC TGCTTACCTT TCGCCTGCCC
GCATTTACCT TGCAGCCCAT CATTGAAAAC GCAGTGAAGC ATGGTACCAG CCATATGTTA
GAGCAAGGTC TTATAAGAGT TACTGGCAAG GTACGCGATG ATTTATTAAT ATTAGAGGTA
ATTGATAATG CAGGGCTATA CCAGTCAGAT AACAATTCGG AGGGTCTGGG GATGAATTTG
GTTCATAAAC GAATTCAAAA TCAGTTTGGA TCTGAATTTG GTATCGATGT CGATTGCCGC
AAAGATGAAT ACACCAGAGT CAGCATTAAG CTACCATATA CGGAAACCCA GTCGTGA
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| Protein sequence | MSLILLLTQQ MSLYLVLVYL VSKTPLFKFF AEAATRLPHK IFIYLIFSGF CIMATYFGEQ
TNDAIANTRA MGAVLGGLLG GPVTGFLVGL TGGLHRYSMG GFTDVACAIS TTLEGFSAGM
ISLYLRRQDK SELIYAPLLV CLVTFCAEML QMGVILLVAQ PFSDAWALVK QIALPMLLVN
SIGAALFMSM VRDQKTMFDK LSSAFSTQAL KIAERSVGVL SKGFNQESST QVAQIIIEET
HVGAVAITDR EHLLAFIGTG ADHHIPGTPI SSKITQDAID NNCVMFADGV NMAYSCSISP
QCRLGSSLVI PLRCENEVIG TIKLYEPKNK LFLNINRTLG EGIGRLLSNQ ILFGRFERQQ
NLLTQAELKL LQAQVNPHFL FNALNTIAAI IKRDPLKARQ LIQQLSQFLR INLKRTTGLV
TLSDELEHID SYLTIEKARF IDKLNVEIDI PDLLLTFRLP AFTLQPIIEN AVKHGTSHML
EQGLIRVTGK VRDDLLILEV IDNAGLYQSD NNSEGLGMNL VHKRIQNQFG SEFGIDVDCR
KDEYTRVSIK LPYTETQS
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