| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2876 |
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| Symbol | |
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| ID | 5611330 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3481832 |
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| End bp | 3483052 |
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| Gene Length | 1221 bp |
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| Protein Length | 406 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640933795 |
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| Product | NnrS family protein |
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| Protein accession | YP_001474611 |
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| Protein GI | 157376011 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3213] Uncharacterized protein involved in response to NO |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.534905 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000000207371 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCACCTTA TAATACCCGA CATATTTACT AGGTTATTAG AGAGTGTCAT GTTAAATATC
GATGAACCGA CTCATACACA ATCCAAATTT TCACTTTTTA AACTAGGTTT TCGTCCTTTC
TTCCTCTTAG GCGCCATGTT TAGCCTTATG GCCATCACCA TTTGGGGAGG CTTCTTCTTT
GGCCATATTC AGTTTTCGCC TCATGGAGAT CCAATATGGT GGCATGGACA TGAGATGATA
TTTGGCTTCG TTATCGCCAT CATTGCAGGC TTTCTGCTAA CGGCTGTACA AAACTGGACC
GGACAACCGG GAGTTAAAGG TAAATCCCTC ATGATCCTGG TCTTGGTTTG GATATTACCC
AGAGTATTAC TGCTTAATAA AGAGTGGGTA TCACTGGAAG TCGTCATGGC GATAGACCTG
GCCTTTGCTC CATTAACCGC ACTCTTGATG GCAAGATCGG TATTAAAGGT TAAACAATGG
CGAAATTTTG TCTTTGTGCC AATTTTATTG ATGCTGATGT TAGTCAACGC AATAAGTTAT
TACGGTCTGC TAACTAATGA CCCTGCGTTA TCTCAAACGG CTCTACACTG CGCTATATTG
CTCATGGTCA CAGTCGTGGC ACTGATAGGC GGTAGAGTGA TTCCATTTTT TACCGAAAGA
GCAACACAAT GGCAGCGGAG TCCGAATATT GTTTGGCTCG AAATCGTCAC CTTTATCAGC
CTTATTTTTC TTATCCTGGC AGTATTATTT CAACAGCCAC TCGTTATCCG GACAAGCGCA
GGCATTGCCG GAATAATCTT ACTGATAAGG TGGTCACGCT GGGGAGGAAG ACACACTGCA
CGCGTTCCCC TGTTATGGTC ACTCCATGTG AGCTATTTTT TCATTCCGCT AGGCTTATTA
CTTATCGCTA CGGGTGAGAA TTTCTCCGCA GGCTTGCATG GGATCACCTT AGGTGGCTTA
GGAGGGATGA TTTTAGCTAT GATGGCCAGG GTATCTTTAG GCCATACAGG CAGAAACTTA
ACCCCACCAA AAATAGTAAC ACTTGCTTTT GCACTCATCA TTCTGGCCAC AGTATTAAGG
ATCTTGGCAG GATTAATGAT GAGTTACTAC CTTCCGTTGC TCGAGGCTGC AATCGTTTGT
TGGGTGCTCT CTTTCGCCAT ATTCATTTAT CACTATACCC CGATTTTACT CAGAGCCCGA
GTGGACGGTA AACCCGGTTA A
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| Protein sequence | MHLIIPDIFT RLLESVMLNI DEPTHTQSKF SLFKLGFRPF FLLGAMFSLM AITIWGGFFF
GHIQFSPHGD PIWWHGHEMI FGFVIAIIAG FLLTAVQNWT GQPGVKGKSL MILVLVWILP
RVLLLNKEWV SLEVVMAIDL AFAPLTALLM ARSVLKVKQW RNFVFVPILL MLMLVNAISY
YGLLTNDPAL SQTALHCAIL LMVTVVALIG GRVIPFFTER ATQWQRSPNI VWLEIVTFIS
LIFLILAVLF QQPLVIRTSA GIAGIILLIR WSRWGGRHTA RVPLLWSLHV SYFFIPLGLL
LIATGENFSA GLHGITLGGL GGMILAMMAR VSLGHTGRNL TPPKIVTLAF ALIILATVLR
ILAGLMMSYY LPLLEAAIVC WVLSFAIFIY HYTPILLRAR VDGKPG
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