| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2870 |
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| Symbol | |
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| ID | 5610584 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3476504 |
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| End bp | 3476887 |
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| Gene Length | 384 bp |
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| Protein Length | 127 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640933789 |
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| Product | scaffold protein |
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| Protein accession | YP_001474605 |
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| Protein GI | 157376005 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0822] NifU homolog involved in Fe-S cluster formation |
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| TIGRFAM ID | [TIGR01999] FeS cluster assembly scaffold IscU |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.836462 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000193406 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGCTTATA GCGAAAAAGT ACTAGAACAT TATGAGAACC CAAGAAACGT AGGTTCTTTC
GATAAAAATG ATCCATCAGT AGTTACCGGT ATGGTCGGCG CACCGGCTTG TGGCGACGTG
ATGAAGCTAC AGCTGAAAAT TGACAAAGAT GGTATGATTG AAGATGCCAA GTTTAAGACT
TATGGCTGTG GAAGTGCAAT TGCATCGAGT TCTCTTGTTA CCGAATGGGT TAAGGGAAAA
ACGATTGAAG AAGCAGCAGC AATTAAGAAT ACCGATATTG CTGAAGAGCT TGCACTGCCA
CCGGTAAAAA TTCATTGCTC AATTTTGGCT GAAGATGCAA TTAAAGCAGC CATCGATGAT
TATAAGTCAA AGCAAACTAA GTAA
|
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| Protein sequence | MAYSEKVLEH YENPRNVGSF DKNDPSVVTG MVGAPACGDV MKLQLKIDKD GMIEDAKFKT
YGCGSAIASS SLVTEWVKGK TIEEAAAIKN TDIAEELALP PVKIHCSILA EDAIKAAIDD
YKSKQTK
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