Gene Ssed_2861 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2861 
Symbol 
ID5611623 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3460303 
End bp3462924 
Gene Length2622 bp 
Protein Length873 aa 
Translation table11 
GC content45% 
IMG OID640933780 
ProductTonB-dependent receptor 
Protein accessionYP_001474596 
Protein GI157375996 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.318133 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000966582 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAACTCTT TGACCTTAAC AGCAAAAGCC GTACGCACGA GTTTAATCGC TGCAGCTGCA 
ACCAGTGTTG CTTTCTCAGG ATTTGCGTTT GCTGAGGAGC AGAGCGATGG CGCTAAAGTT
GAAAGAATTG AAGTAACAGG TTCTCGAATC CAAAGAACGG ATATGGAAAC GGCAAGTCCG
GTTACTGTAA TCGATGCCAG CGCAATTAAA GCGGCCGGTG CAACTTCAAT CGATGAAGTC
CTGCAAAAGA TGACCGCCAC TGGCGGCGCG ATGACTAATC CTGGTATCAA TAACGGCTCT
CAAGGTAATG CCTCTATCAA TTTAAGGGGT TTAGGTTCTC AGCGAACCTT AGTATTAGTC
AACAACCGCC GTATGGTTAA TTCAGGTACC GGTGCGGCTT CTACAGTCGA TTTGAATACT
ATTCCCGTAT CTATGATTAA ACGTATCGAA GTACTGAAAG ATGGTGCTTC ATCTGTATAT
GGGTCCGATG CTGTAGCTGG TGTTGTGAAC ATCATCCTTA AAGATGACTT CGAAGGTTTA
GAGGCTAATG TGCAAACAGG TGTTTCCGGT CAGGGAGACG CAAGTGAAAC CAGCTTCGAC
CTAACCATGG GGGGAAGCTT TGATCGCGGA AATGTCGTTA TGGGCCTGCA GTACATGGAC
CGTGGCGAAG CGAGCATGGC TGACCGCGAT GCCACACAGT GTGACTATGC CGAGCGTGTC
GGTGCCGATG GTAATTTAGA GCTGTATTGT GGCGGTAGTT CATATACCCC AGGTGGTCAT
ATTTGGGGAC CTGATGGACG TGATTCTTTA CAAGGTAGTC TTGATGGAAC TTGGCATGAA
TTTACCGACG ATGATAAGTA TAATTACAAT GCGTCGAGTT ACTTATATAC ACCAATGCAG
CGTCTTAACC TGACTGCATT AGGTAACTTT GAACTTACTG ATTCGATTAA TCTGTTCAGT
GAAGCTATGT ACTCTAAGCG CTGGTCTGAA CAGCAGATGG CACCTCAGCC GATATGGACT
GACACATTTA CATATACAGA GGCCATGGGA GATAGCCTAT TAGAGCACGG CTACGAATAT
GGTGACGAAT TGGACTATGG TCGTCGTATG GCCGATGTCG GAAATCGTGA GTTTTCTCAG
GTTGTAGACA CGGTTCGAGT AGTCGTTGGA CTGGACGGCT TGTTGGATAA TGGTTGGGCA
TGGGATACCT CTGTTAACTA CGGGCGAAAT GATTCGGTAG ACCGTCTGGC AAACCTTATC
AATATGGGCT CTGTTAATAC AGGTATTGAA GAGGGGACGT TTAATCCACT GGATCAAGCT
TCCTGGTCGC AAGAAAATAT GAATGAGTAT CTGTATACCG AGCTAAATTC CGGTGGTAGT
GAGATGTTTA TCGTATCTGC TAACCTTTCT GGCGAGGCCT TAGAGTTACC TGCTGGCTAT
CTGGGGTTCG CAACCGGACT AGAGCGTAGA ACAGAAAAAG CCTGGTTTAT CCCTGACTCT
TTAACATCTC AAGGTATGGC TAATGACCCC AAGGTCGAGC CAACAGGTGG AGAGTATGAT
GTTACTGAAG CATATTTAGA GTTAGCGATT CCATTATTGT CAGGCGTATT TTTAGCCGAG
CAAGTTGATT TGAGTGCCGC AGTTAGATAT TTTGATTACA GTACTTTTGG CAGTGATAGC
ACCTGGAAGC TGGGTTTGAC TTGGCGCATG ACTGATGACT TTATGCTTCG TAGTGTAGCT
TCAACGGCAT TTAGAGCACC GTCAGTCGAT GAGTTATACT CAGGTAAGTC CCCGTCGTTC
GATCAGGTGG AGCATCCAGT CGGTCAAGAT CAAGCGGAAG TGACACGCGG TGGTAACCCA
AATCTGACAC CTGAAGAAGC TGAAACCTTT ACTGCAGGTT TTGTCTATTC ACCTTCATGG
TTTGATGGTT TCTCGGTAAC AGCAGATTAC TATGATATCT CGATAACCAA CTCAATTGCC
TTGGTTGATT CGCAGTACAT TGTTGACCAG TGTATGGATG CACAGGGTAA CCCAATTAAT
ACAGAAACAA GTCTGTGTCA GTCTGCCGAT ATCAAGATGG GCGGTGGTAA TCGCATCATA
TTTAACAACC AGCTACAGAA CATTGGTGCT GAAAACACTT CAGGTATCGA CATTAATTTA
GCTTATGCCT TCGATGCTGT TGGACTTGCA TGGACAACAA GTTTAGATTC GACTATTTTG
CTCGAGAACG AATCTATTAT CTTAGGTGAG TCAATAGATT ATGCGGGCCT TATCACGTCA
GGTAGTGGCG GTTTTGCCAA GTATAAAACT AATTTTGACT TAGGTGTGGA AGGGGATAGT
TGGGGAGCAC ACTATCAGGC ACGATATATC TCCGGAATGG ATAGTTATGC GTGTCAAAGT
GAGCCATCTT CTTGTTATGC ACCATCGACA GATAGCATTA TCTATCACGA TGTTTCAGCT
ACTTACTTCC TTCCTCAAGG ATGGACGCTG TCAGCTGGCG TAAATAACTT ACTCGACGAA
GAGGCACCAT ATTACACAGG TAATAACGAT GCCAACACAG ATCCCTACAC TTATGATACG
TTAGGACGTT ACTTCTACTT GCAAGCGAGT GTAAAATTAT AA
 
Protein sequence
MNSLTLTAKA VRTSLIAAAA TSVAFSGFAF AEEQSDGAKV ERIEVTGSRI QRTDMETASP 
VTVIDASAIK AAGATSIDEV LQKMTATGGA MTNPGINNGS QGNASINLRG LGSQRTLVLV
NNRRMVNSGT GAASTVDLNT IPVSMIKRIE VLKDGASSVY GSDAVAGVVN IILKDDFEGL
EANVQTGVSG QGDASETSFD LTMGGSFDRG NVVMGLQYMD RGEASMADRD ATQCDYAERV
GADGNLELYC GGSSYTPGGH IWGPDGRDSL QGSLDGTWHE FTDDDKYNYN ASSYLYTPMQ
RLNLTALGNF ELTDSINLFS EAMYSKRWSE QQMAPQPIWT DTFTYTEAMG DSLLEHGYEY
GDELDYGRRM ADVGNREFSQ VVDTVRVVVG LDGLLDNGWA WDTSVNYGRN DSVDRLANLI
NMGSVNTGIE EGTFNPLDQA SWSQENMNEY LYTELNSGGS EMFIVSANLS GEALELPAGY
LGFATGLERR TEKAWFIPDS LTSQGMANDP KVEPTGGEYD VTEAYLELAI PLLSGVFLAE
QVDLSAAVRY FDYSTFGSDS TWKLGLTWRM TDDFMLRSVA STAFRAPSVD ELYSGKSPSF
DQVEHPVGQD QAEVTRGGNP NLTPEEAETF TAGFVYSPSW FDGFSVTADY YDISITNSIA
LVDSQYIVDQ CMDAQGNPIN TETSLCQSAD IKMGGGNRII FNNQLQNIGA ENTSGIDINL
AYAFDAVGLA WTTSLDSTIL LENESIILGE SIDYAGLITS GSGGFAKYKT NFDLGVEGDS
WGAHYQARYI SGMDSYACQS EPSSCYAPST DSIIYHDVSA TYFLPQGWTL SAGVNNLLDE
EAPYYTGNND ANTDPYTYDT LGRYFYLQAS VKL