| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2859 |
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| Symbol | |
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| ID | 5614174 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3458650 |
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| End bp | 3459576 |
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| Gene Length | 927 bp |
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| Protein Length | 308 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640933778 |
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| Product | dihydrouridine synthase, DuS |
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| Protein accession | YP_001474594 |
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| Protein GI | 157375994 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.748261 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000322781 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGCGTAA TACTTGCTCC GATGGAAGGG GTTGCCGATG CACCGATGCG TTCGCTACTC
ACTAGTGTTG GTGGATACGA TATGGTCATC AGTGAATTTA TTCGCGTCGT AGATCAGCTA
CTGCCTGAAA AGGTTTTTTA TCGATTATGC GCCGAACTAG CCAATAACAG TCAAACCCAA
GCGGGAACCC CTGTACGACT GCAACTATTA GGGCAACACC CCAGCTGGAT GGCCGAAAAT
GCCCTTAGGG CAGTAGAGCT GGGCTCTCGT GGTGTCGATC TAAATTTTGG CTGCCCGGCC
CCAATGGTCA ATCGCAGTAA TGGTGGTGCA GCGCTGCTAA AAGAGCCTGA TACTATCTAC
CGTGTAACTC ATTCAGTGAG AGAGGCTGTC CCCAGTAATC ACCCCGTATC AGCCAAAATA
AGATTAGGCT GGGATGATAA GAGTCGATGT GTCGAAATTG CACAGGCAAT TGAAGCCGCC
GGAGCCACTG AACTGACGGT ACATGCCCGC ACTAAAGAGG AAGGCTATAG ACCCCCCGCT
CACTGGGAAT ATATAAATCA GATCAAAGAG GCTATCTCTA TCCCTGTTAT TGCCAACGGC
GAAGTCTGGA ACCGAGAGGA TTACCAAAGG TGTCAAGTTG TCAGTGGCTG CAATGATGTC
ATGGTGGGTC GCGGAGCATT AGCCGTTCCC AACCTTGCTC ATGTCTTAAA AGGAACACAA
GATGCCATGC CATGGGATGA AGTTAAGCAA CTGCTGCTTC AATATTCTGA ATATGAGATC
GTCAGTGCTA AAGAGAAATA CTACCCGGCA CGAATCAAAC AGTGGCTTAG GTTTATTGTC
CTCCAGTATG AAGAAGCCGA CCTCCTGTTC AGACAGGTTA GAGTCATGAA ACAAACGGCC
GACATTTTAG TGGCATTAAA AGCCTAA
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| Protein sequence | MRVILAPMEG VADAPMRSLL TSVGGYDMVI SEFIRVVDQL LPEKVFYRLC AELANNSQTQ
AGTPVRLQLL GQHPSWMAEN ALRAVELGSR GVDLNFGCPA PMVNRSNGGA ALLKEPDTIY
RVTHSVREAV PSNHPVSAKI RLGWDDKSRC VEIAQAIEAA GATELTVHAR TKEEGYRPPA
HWEYINQIKE AISIPVIANG EVWNREDYQR CQVVSGCNDV MVGRGALAVP NLAHVLKGTQ
DAMPWDEVKQ LLLQYSEYEI VSAKEKYYPA RIKQWLRFIV LQYEEADLLF RQVRVMKQTA
DILVALKA
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