| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2858 |
|---|
| Symbol | |
|---|
| ID | 5614173 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3457533 |
|---|
| End bp | 3458078 |
|---|
| Gene Length | 546 bp |
|---|
| Protein Length | 181 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640933777 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001474593 |
|---|
| Protein GI | 157375993 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.0000000291416 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTAG TTAAAAAGAC CGCTGTTGCT GCTGCCTTAG GCACTGTTGT TATCGGTTCA
GCTTTTGCTG CTGAGGTCCA GGCTAACCCA TTCGGTTATA GTCAAATGGA AGCGGGTTAC
CAGCTTGTAG ATGGCGAAGG CAAGTGTGGT GGCGATATGA AGAAAGGGAA AGAGGGTAAG
TGCGGTGAAG GCAAATGCGG CGAAGGCATG AAGAAAGGTA AGGAAGGTAA GTGTGGCGAA
GGTATGGCCA AGGGAAAAGA GGGCAAGTGT GGTGAAGGTA AATGCGGCGA AGGCATGAAG
AAAGGCAAGG AAGGTAAGTG CGGCGAAGGC ATGGCCAAGG GAAAAGAGGG CAAGTGTGGT
GAAGGTAAAT GCGGCGAAGG GATGAAGAAA GGTAAGGAAG GCAAGTGCGG TGAAGGCATG
GCCAAGGGGA AAGAGGGCAA GTGTGGTGAA GGTAAATGTG GCGAAGGGAT GAAGAAAGGA
AAAGAGGGTA AGTGCGGCGA AGGGATGAAG AAAGGTAAAG AGGGCAAGTG CGGCGGAGAT
ATGTAG
|
|---|
| Protein sequence | MNLVKKTAVA AALGTVVIGS AFAAEVQANP FGYSQMEAGY QLVDGEGKCG GDMKKGKEGK
CGEGKCGEGM KKGKEGKCGE GMAKGKEGKC GEGKCGEGMK KGKEGKCGEG MAKGKEGKCG
EGKCGEGMKK GKEGKCGEGM AKGKEGKCGE GKCGEGMKKG KEGKCGEGMK KGKEGKCGGD
M
|
|---|
| |