Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2852 |
Symbol | |
ID | 5612927 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3450779 |
End bp | 3453646 |
Gene Length | 2868 bp |
Protein Length | 955 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640933771 |
Product | DNA-directed DNA polymerase |
Protein accession | YP_001474587 |
Protein GI | 157375987 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2812] DNA polymerase III, gamma/tau subunits |
TIGRFAM ID | [TIGR00678] DNA polymerase III, delta' subunit [TIGR02397] DNA polymerase III, subunit gamma and tau |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00013426 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.000000946714 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCATATC AGGTGTTGGC CAGAAAATGG CGCCCTGCTA CATTCGAGCA AATGGTTGGC CAGTCGCATG TTTTGCATGC TTTAACCAAT GCTCTTTCTC AGCAAAGATT ACATCATGCC TATCTCTTCT CCGGTACCCG TGGTGTAGGC AAAACAAGTT TAGCCCGTCT GTTTGCGAAA GGACTGAATT GTGAGAAGGG AGTTACCGCT TCTCCATGTG GTCAATGTTC CAGTTGTATC GAGATCTCTG AGGGGCGTTT TGTCGACCTC ATTGAGGTTG ATGCGGCCTC GAGAACCAAA GTCGATGATA CACGTGAACT ATTAGATAAC GTTCAGTACC GACCCAGTCG AGGACGTTAC AAGGTTTATC TTATCGATGA AGTTCACATG CTCTCCAGAA GCAGTTTTAA TGCCCTGTTA AAGACGCTTG AAGAACCTCC CGAGCATGTT AAGTTCCTGC TGGCTACCAC TGATCCACAA CGACTTCCGG TCACCGTGTT GTCTCGCTGT CTGCAATTTA ACTTAAAGAG CTTAACGCTG GAAGAGATAG AACAGCAGTT AACTCATGTG CTTTCTCAAG AGCAATTGAG CTTTGAACCA CAAGCACTGA AATTATTAGC AAAATCTGCC AATGGCAGTA TGCGTGATGC ACTTAGCCTG ACCGATCAGG CGATTGCCTT TGGTGCGGGC CAAGTCATGC TTACTCAAGT ACAAACCATG TTGGGTAGCA TCGATGAGCA TCACGTTATT ACCTTGCTTA ATGCTTTGAT TCAAGGTGAT ATTGAAAATC TGATGCAGGT AACTGCTAAG GTTCTCTCCT TTGGGGCTGA TCCACAGGAA GTGCTTCGAA GTTTACTTGA GCTGTTACAC CAAATTACGC TAAGCCAGTT TGCGCCGGCC GCGGCTCAAC TGTCAATTTA CAGTGAACAG ATCACCGCAT TTGCCGAGCA GATAAGTCCC GAGCAGATCC AACTCTATTA TCAACTGTTA CTGACCGGGC GCAAAGATCT TCCCCATGCG CCAGATCCAA AATCCGGACT CGAGATGGCC TTGCTAAGAG CCGTGACCTT TGTACCGGAA GTGCCGGTCA AGCGATGGTC GGTAGCAGAA CCGGCGACCA TCACTGTACC TGAAGTGAAG TCTGTATCTC AGCTGGAACG GGATAATGTT AATTCGAACG CTCACCCTCC AAAAGAGCAG TCTTCAGTAG CTGGCTCTTC AGCAGATCAG TCTTTGGTAG ATAGCTCATC AAACAGTGGC TCTTCAGAAG ATAGTCCGGC AGCATCGCAG GAGTCTAGCG ATGATGATTC AGACTTACTC AACAGCTTAA ACAGTGAGCA AGCCCTGATA TTGAGCCAGG CTTCTAGTCA GGGAATGGAG CAGGGCGCAG CGGTAGAGTC ACCGGTCGAA GCCGTTGCAG TGCAAGGTGT AGCGTCAGAA GTGCCTAAGA TTGTTGAAAC ACAATTTGTT AAGGCTGAGC CTGTTGAGAC AGAAGCTGCT GTAAACGATG CTCCTGCGGT CGAGACTCTT GTGGTTGATC CTGGCGCAAA TATAGAGCGC AAAGACGAAG AGCCGCAGTC TCAGCAGCTT AAGCCCTCAG TTACAGACAA GCAATCAGAT GATACCAGGC AAACAGAGGC TCAGGTGACA CCGGAAAGTG TGACAGAGCA AAGCATACCA GAGTTAAGTG TATCGTCGCC GAACTCTATG CCCGACGAAT ATTACGCCGC GCAAGATGCT CAATTTGATG CACAAACTGA CGCCTATGAT GATCATCCAC AGCAGATGGA TGAATATCTT CCTTTCGACT CTTTAGCACA GGGAAACCCC GGAGCAAGCG ACAGTGAGCT AAATCAGGGG AATAGCGCTG CCGTTACATC ACCCGCACCG GACGTTGCTG AAGATGATAT TTTAGATGCC GTCCTGGCCG CCCGGGACTC ATTGTTAACA GAATTGGTTG AGAGTGAACC TAAGGAGAGT GGTGGAAAAA AGCCTGAAGC GGAACGCCAG AGCTTTGTGC CACCGTCTCG AAAACCAGCT CTTAGTGAGT CCGAGTCCAA TGCTGTCGAT GAGGGCGTAC ATGAACTGGG TGACCAAGTG GAAACTCAGG AGCATGAGGG AGCCGATAGT CAGATTGAAG ACAGGCCTCC ATGGGAGGAG CAAGAATCGT CAGTTTCATT GAGTGGTGAG TCATCAAAGG CTGCCGAGGA GATGCTTGAT ACATCGGTTC ATGATGCCGT TAAGGGTGAG GAGAGTCACG TAGAGCAAGT CGCGGGGGCT CACAGCCAAA CTCAAGCTCA GGCTCAAAGT CATGCATCGA CGGCGGTCTT AAATCACAGT GAGTCATCAG TTAGTGCCGA GCAGATCCCC GCTAAAGTGG TTGTATCAGG TAGTGGTGAA ATCACCGGCC ACGATATCGA CCTTAAATGG TATCGTTTGA TGTCGGCACT GGATGTGGGC GGAAGGGTCA GGCAACTCGC GGTCAATTCC GTTTGCCATG AGTTTATTGC TCCCATGTCA TTGCTATTGA AGCCCAATCA AAAGCATTTA GCTGCTGATG TCGCCATAGT TCAGTTAGAA GAAGCCTTAA GCCGTGCACT CGGAAACGAA ACCAAGGTGG CGATTGAAGT GGGTGTCGAT GATGTGCGTG AGACACCATT AGAGATACGT CAGCGTTTTC ACAGAGAGCT GCTTGCCGAG GCCCAACAAG GCTTGATGAG TGATAGCAAT ATCCAATGGC TGATGAGTCA GATGGAGGCT GAATTTGAAA ATGATAGTTT AAGTTACAAC CCCGAATTGT TGAGTTTAAA AGGAAATACC ATTGAGCTTA TCGATAAGTC GAACTTTAAG ACGCTAACTC AGTCATAA
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Protein sequence | MSYQVLARKW RPATFEQMVG QSHVLHALTN ALSQQRLHHA YLFSGTRGVG KTSLARLFAK GLNCEKGVTA SPCGQCSSCI EISEGRFVDL IEVDAASRTK VDDTRELLDN VQYRPSRGRY KVYLIDEVHM LSRSSFNALL KTLEEPPEHV KFLLATTDPQ RLPVTVLSRC LQFNLKSLTL EEIEQQLTHV LSQEQLSFEP QALKLLAKSA NGSMRDALSL TDQAIAFGAG QVMLTQVQTM LGSIDEHHVI TLLNALIQGD IENLMQVTAK VLSFGADPQE VLRSLLELLH QITLSQFAPA AAQLSIYSEQ ITAFAEQISP EQIQLYYQLL LTGRKDLPHA PDPKSGLEMA LLRAVTFVPE VPVKRWSVAE PATITVPEVK SVSQLERDNV NSNAHPPKEQ SSVAGSSADQ SLVDSSSNSG SSEDSPAASQ ESSDDDSDLL NSLNSEQALI LSQASSQGME QGAAVESPVE AVAVQGVASE VPKIVETQFV KAEPVETEAA VNDAPAVETL VVDPGANIER KDEEPQSQQL KPSVTDKQSD DTRQTEAQVT PESVTEQSIP ELSVSSPNSM PDEYYAAQDA QFDAQTDAYD DHPQQMDEYL PFDSLAQGNP GASDSELNQG NSAAVTSPAP DVAEDDILDA VLAARDSLLT ELVESEPKES GGKKPEAERQ SFVPPSRKPA LSESESNAVD EGVHELGDQV ETQEHEGADS QIEDRPPWEE QESSVSLSGE SSKAAEEMLD TSVHDAVKGE ESHVEQVAGA HSQTQAQAQS HASTAVLNHS ESSVSAEQIP AKVVVSGSGE ITGHDIDLKW YRLMSALDVG GRVRQLAVNS VCHEFIAPMS LLLKPNQKHL AADVAIVQLE EALSRALGNE TKVAIEVGVD DVRETPLEIR QRFHRELLAE AQQGLMSDSN IQWLMSQMEA EFENDSLSYN PELLSLKGNT IELIDKSNFK TLTQS
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