| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2843 |
|---|
| Symbol | |
|---|
| ID | 5610455 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3438969 |
|---|
| End bp | 3441485 |
|---|
| Gene Length | 2517 bp |
|---|
| Protein Length | 838 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640933762 |
|---|
| Product | Ig domain-containing protein |
|---|
| Protein accession | YP_001474578 |
|---|
| Protein GI | 157375978 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000356214 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.00000000529133 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTCAG CTTATCAAGT TTTGGTCGCA TTTATCTGTT CGTTTTTTAT CGTTGCTTGT
AGTGGAGGAG GAGACATCGT AGATGATGGT GGTGGAGGGA CTACTCCCCC CGCAACCATT
ACAGTTGAGT TAGCAGTTAA TAACACTCAA GTGTCGGTTG CAGAACCCGC AACGATTACG
GCAACGGTGA AAAGTTCGAC TGGAGCTGCA GTTAGCACGT TAGTTTCTTT CACTCTAAAC
AATGACACTT ATGGAACATT TGCCCCCGGT ACCGGAGAAG TAGCTACCAA TGCCGATGGC
GTTGCAACTA TTCAATTGAA TACCGCTGAG ATCAACACCG GAGCGACAAT AACGGCAACC
ATTTCATCCG GTGAGTCAGC CTCTTTGAAT GTCACTATGG TAGGTGATGG TGGTGAAGCT
GGTGGCGGTG CTCAAGTATC TTTGGTGCTA ACAGATACTT CCGGTAATCC AATACAAACA
ATTAGCACTC TATCGCCAGG TAGGTTAACG GCGACAGTGA CAGGAATTAA TAAATCTGTA
ATTGTAACTT TCGATAGCCC TATCGGTGAT CTACCGATTA AAAGTGCTGT AACCGATGCC
GATGGTAAGG CTACCGTCGA TATCTATGCC GGTAGCTCTT TGGGCGCTGG CGAGGTAACG
GCAAGTTTGT CGACTAATGA GGTCGGTAAA ACGATTGTTG TCGTTGGCGC AACGAATGTT
GTGATGGGAA GTGGTACCCC CTTCGAAGAA GGCGTCGCGG AAGTAAGTAC AGTTAATTTG
TCTGCTGGTG GTACTGCAAC TATTTCTGTA CTCATTCAAG ACGACCAGGG AACCGCGTTT
ACCCAGCCTG TTGATGTGAA TTTCTCGTCA ACTTGCGCGA CAAAAAATCC AGCACAGGCT
CAAATAAGCT CTCCTGTATC ATCGAGTAAT GGTGTTGCGA CGTCGACCTA TTTAGCCCAA
GGCTGTGTGG GAGAAGATCA AATTCATGTT ACCGCTGACG CTGGCGGCAT CAGCCTATCT
GCTGTTGGTA TCATAAACGT GCTTCAAGCC GATGTGGGGA GTATTATTTT TGTCTCGGCC
GAACCGGAAA ATATCGGTAT TTTAGGTACG GGAGGAACCG AGTCCTCAAC GGTTAAGTTT
CAGGTTCTCG ATAAAAACAG TAATCCTGTT AGCAATCAGA ATGTGATTTT TGAACTGAAT
ACAAACGTAG GTGGAGTCGA TATCAGTCCT GCTGTTGCAA CCACAAACAA TGAAGGTATC
GTTCAAACTG TTGTGACCAC AGGTACTGTG GCGACTTCGG TCAGGGTGAC CGCGACAGTG
GATGATAACT CTAATCCGGT TATCTCCAGT CAGTCTAAAC AACTTATTAT CTCAACAGGT
ATCCCGGATC AGGATAGCTT CTCGCTATCT GCCGAAGTGC TAAATGCCGA GGGGTGGGAT
CGTGATGGTA CAGAAGTGAA AGTCACCGCA CGTATGGCCG ATGCCTTCAA CAACCCGGTT
CCCGATGGAA CAACGGTCTC ATTTACAACG GAAGGTGGTG CGATTGAAGA TGCTTGTCAG
ACAGTAAATG GTGCTTGTTC GGTTACATGG ACGAGTCAAC TGGCTAGGCC CGAAGGGCAA
TCACTGTTCG ATGAGAAAGG CGACCAAATT CGTAATCCTA AAGCAGAATT AGCGTGTTAT
GTGCTTAAAG TTAATGAAGG TGACTCATCT ATCTGTGATA TTGCTAATGA TGCTCAGACT
CGCGTCTATG GTAACATCTA TGGCCAGCAA TATGGTGGTC GGGCAACGAT AACGGCGACG
GCAATCGGCG AGGAGACCTT CCCGGATCTC AATGGTAATG GCCGTTTTGA TGCCAGTGAA
ATGAGTGAAT TTTTAACCGG CAAGGATGTC ACCGGCGAGG GATTCGATCT CAACGATGCA
TTTAACGATT ACAACGAAGA CACAATCTTT AACCCTCAAC CCAGTGGTCA ATTAATAGGT
CACGCAGGTG GCGCTTTAGA AGAGTTAGTC GACTTTAACT CAAATGGCGT ATTTGATTTA
AAAGACGGCT TATACAATGG TGTGCTCTGT TCTTTACCGG CTCACGTTGG CTGTGCCGAC
GGCATTGCCG ATTCTAAATC TTTATATGTA CGCCGAAGCT TAACTATGGT GATGTCGGGT
AGCAGTGCTG TGGCGACTAA ACATGCAGAT ATTATTATCG AAGATAAGGA TGGTGTGCAT
AATCCAGGAA GGATTACCAT TGTAGGGAAA GGCTCCGCTT CAGTATACTT CACTATCTCA
GATCTTCATA ACCAGCAGAT GCCAGCGGGA AGTAAGGTGA TTTTCACCGC TACGGCAGGA
TCTGTGGTGA GTGGTAGTGA ATATATATGG CCAAGCAGTA ACCATAATGG TGGTCGAGAC
GTTAAAGTAA CAGTCAAGGG GGAGGATGAA CCTAACTCGG GAGTATTATT GGTTCAAGTT
GAGACTCCTA ATGGGGTGGT GACAGAAGTT GTCGCGGTCG GTATTACCAT TGAGTAA
|
|---|
| Protein sequence | MKSAYQVLVA FICSFFIVAC SGGGDIVDDG GGGTTPPATI TVELAVNNTQ VSVAEPATIT
ATVKSSTGAA VSTLVSFTLN NDTYGTFAPG TGEVATNADG VATIQLNTAE INTGATITAT
ISSGESASLN VTMVGDGGEA GGGAQVSLVL TDTSGNPIQT ISTLSPGRLT ATVTGINKSV
IVTFDSPIGD LPIKSAVTDA DGKATVDIYA GSSLGAGEVT ASLSTNEVGK TIVVVGATNV
VMGSGTPFEE GVAEVSTVNL SAGGTATISV LIQDDQGTAF TQPVDVNFSS TCATKNPAQA
QISSPVSSSN GVATSTYLAQ GCVGEDQIHV TADAGGISLS AVGIINVLQA DVGSIIFVSA
EPENIGILGT GGTESSTVKF QVLDKNSNPV SNQNVIFELN TNVGGVDISP AVATTNNEGI
VQTVVTTGTV ATSVRVTATV DDNSNPVISS QSKQLIISTG IPDQDSFSLS AEVLNAEGWD
RDGTEVKVTA RMADAFNNPV PDGTTVSFTT EGGAIEDACQ TVNGACSVTW TSQLARPEGQ
SLFDEKGDQI RNPKAELACY VLKVNEGDSS ICDIANDAQT RVYGNIYGQQ YGGRATITAT
AIGEETFPDL NGNGRFDASE MSEFLTGKDV TGEGFDLNDA FNDYNEDTIF NPQPSGQLIG
HAGGALEELV DFNSNGVFDL KDGLYNGVLC SLPAHVGCAD GIADSKSLYV RRSLTMVMSG
SSAVATKHAD IIIEDKDGVH NPGRITIVGK GSASVYFTIS DLHNQQMPAG SKVIFTATAG
SVVSGSEYIW PSSNHNGGRD VKVTVKGEDE PNSGVLLVQV ETPNGVVTEV VAVGITIE
|
|---|
| |