| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2841 |
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| Symbol | |
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| ID | 5610453 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3434354 |
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| End bp | 3437023 |
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| Gene Length | 2670 bp |
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| Protein Length | 889 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933760 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001474576 |
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| Protein GI | 157375976 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.598505 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000400834 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGTAAAT CGCTAGTTAT TGTCGAATCA CCGGCCAAAG CCAAGACTAT TAATAAATAT
CTCGGCAAAG ATTACATCGT GAAATCGAGT GTGGGTCATA TTCGTGACCT GCCAACATCA
TCCAGTACTG AAGCTAAAGT GGCGACGAAA ACGCCGGCTG AAGTGCGAAA AATGGCTCCT
GAAGAGAAAG CCATCTACAA GAGTATAAAA GCCAAGCAAG CACTCGTTTC TCGTATGGGA
ATCGATCCTG ATAAAGGCTG GAAAGCTAAT TATCAAACAC TTCCCGGCAA AGAGAAAGTC
GTTAAAGAGC TGCAAAAATT AGCCGAGTCC GCTGACCAAA TCTTTCTCGC AACCGATTTG
GATAGAGAGG GGGAGGCAAT TGCATGGCAT CTTCAAGAGG TCATTGGTGG TGATGCGTCA
CGTTATCAAC GCGTCGTCTT TAATGAGATC ACTAAATCTG CGATTCAGGA TGCGTTTAGT
AAGCCTTCGA CCTTAGACAC GAATATGGTT AACGCTCAAC AGGCGCGTCG TTTCCTCGAC
CGCGTTGTTG GTTTTATGGT CTCTCCGTTA CTTTGGAAAA AAGTGGCGCG GGGACTCTCT
GCCGGACGCG TACAATCGGT AGCGACCAGA CTCGTTGTCG AAAAAGAGAG CGAAATTAAA
GCCTTCGTCC CTGAAGAGTT CTGGGATATT CATGCTCAAC TGGAAACCCT CAACAATGCC
GCATTAAAGA TGCAGGTTGT TAAGTTTCAG GATAAGGCAT TTAATCCGGT TACAGAGTCA
CAGGCCCAAA CGGCAACCTC GGCCCTGTCT CAGTCAAGTT TTGTTGTCGC GGCTCGTGAT
GACAGAGCGA CATCGAGTAA ACCTTCGGCG CCCTATATCA CTTCTACTTT GCAGCAAGCT
GCGAGTACGC GTTTAGGTTT TGGTGTTAAG AAAACCATGA TGATGGCGCA ACGTCTCTAC
GAGGCGGGTC ATATCACTTA TATGCGTACC GATTCGACCA ACTTGAGCCA AGAGGCTCTC
GATGGTGTGC GGGAGATGAT TGCTAAAGAG TTTGGGGATA AATATCTGCC TGAAGCGCCA
ATTCGCTATG GTAGTAAAGG TGGTGCTCAA GAAGCTCACG AGGCGATACG TCCCTCTGAT
GTAAGCGTAC AGGCAGCATC CATGAAAGAC ATGGAGAGAG ATGCTCAGCG CTTGTATGAG
TTGATCTGGC GCCAGTTTGT CTCTTGTCAG ATGACACCAG CTAAATATGA TGCGACACGA
TTGACCGTTA AAGCGGGTGA GTACGAGCTA AAGGCGACGG GGCGTACATT ACGCTTCGAC
GGTTGGACTC GTGTTCAGAC AGTTGTGAAG AAGAAAAACG AAGAAGATAA CACGCTTCCT
GTTGTTGCAC AGGGCGACAA GCTTAATTTG CAAGAGCTGA TGCCTAAGCA ACACTTTACC
AAGCCGCCTG CGAGATACGG TGAAGCGTCA CTGGTTAAAG AGCTTGAAAA ACGTGGTATT
GGCCGTCCTT CGACCTATGC AACCATTATC TCGACTATTC AAGACCGTGG CTATGTGAAA
GTTGAAAACC GCCGTTTCTA TGCCGAGAAG ATGGGTGAGA TCGTCAGCGA AAGCCTGGTT
GGTAGTTTTA AAGAGTTAAT GAGTTATGAC TTCACCGCCA GCATGGAGCA AACCCTCGAT
GATGTGGCGC AAGGCGAACT TAAGTGGAAA AAGGTCTTAG ATGGTTTCTA CAAAGATCTG
ACGAAACAGA TTGAGCAAGC CGAGTTGGCA CCAGAAGAAG GCGGTATGCG TCCTAACGAG
ATGGTGTTAA CGGACAACAT TAAGTGTCCA ACTTGTGATA GACCTATGGG TATTCGAACG
GGAACAACGG GTGTATTCCT GGGCTGTTCC GGTTATGCCT TACCCCCCAA AGAGCGTTGT
AAGACCACGA TGAACCTCAC TCCCGGCGAA GAAGCTGTGA GCGAAAACAG TGAAGATGCA
GAGACTGACG CATTGAGAGC TAAACATCGT TGTGACGTGT GTGGGACTGC GATGGATAGT
TACCTCATCG ATGAGAAGCG TAAGCTTCAT GTCTGTGGTA ACAACCCTAT TTGTGGCGGC
TACGAAGTCG AGCAGGGGCA GTTTAAAATT AAGGGCTATG AAGGTCCTAT TATCGAATGC
GACCGTTGTG GCAACGATAT GGAGCTCAAA AATGGCCGCT TCGGTAAGTA CTTTGGTTGT
ACTAACGATG ACTGTAAGAA TACTCGTAAG TTACTTAAGA GCGGAGAAGC TGCGCCGCCA
AAAGAAGATC CTATTCACCT TCCTGAGCTG AAATGTACTA AGTCAGATGG CTACTTTGTG
CTTAGAGATG GTGCCGCGGG GATCTTTATG GCTGCCAGTA CTTTTCCTAA GTCACGTGAG
ACTCGCGCGC CGTTAGTGGA AGAGCTGGTT AAATATCGTG AGCTTCTGTG GCCTAAGTAC
GCTTATCTGG CCGACGCTCC CGTTACCGAT GATGATGGCA ATAAGGCAAC GGTTCGATTT
AGTCGTAAGA CGAAAGAGCA ATATGTTGCT ACCGATGTCG ATGGTAAAGC GTCTGGATGG
GCATCTAAAT TCATTGACGG TAAATGGGTT TCTGAGTCTA AGAAGAAAGC TAAGCCGAAG
GCAAAAGCTA AGCCAAAAGA GAAAAAGTAA
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| Protein sequence | MGKSLVIVES PAKAKTINKY LGKDYIVKSS VGHIRDLPTS SSTEAKVATK TPAEVRKMAP
EEKAIYKSIK AKQALVSRMG IDPDKGWKAN YQTLPGKEKV VKELQKLAES ADQIFLATDL
DREGEAIAWH LQEVIGGDAS RYQRVVFNEI TKSAIQDAFS KPSTLDTNMV NAQQARRFLD
RVVGFMVSPL LWKKVARGLS AGRVQSVATR LVVEKESEIK AFVPEEFWDI HAQLETLNNA
ALKMQVVKFQ DKAFNPVTES QAQTATSALS QSSFVVAARD DRATSSKPSA PYITSTLQQA
ASTRLGFGVK KTMMMAQRLY EAGHITYMRT DSTNLSQEAL DGVREMIAKE FGDKYLPEAP
IRYGSKGGAQ EAHEAIRPSD VSVQAASMKD MERDAQRLYE LIWRQFVSCQ MTPAKYDATR
LTVKAGEYEL KATGRTLRFD GWTRVQTVVK KKNEEDNTLP VVAQGDKLNL QELMPKQHFT
KPPARYGEAS LVKELEKRGI GRPSTYATII STIQDRGYVK VENRRFYAEK MGEIVSESLV
GSFKELMSYD FTASMEQTLD DVAQGELKWK KVLDGFYKDL TKQIEQAELA PEEGGMRPNE
MVLTDNIKCP TCDRPMGIRT GTTGVFLGCS GYALPPKERC KTTMNLTPGE EAVSENSEDA
ETDALRAKHR CDVCGTAMDS YLIDEKRKLH VCGNNPICGG YEVEQGQFKI KGYEGPIIEC
DRCGNDMELK NGRFGKYFGC TNDDCKNTRK LLKSGEAAPP KEDPIHLPEL KCTKSDGYFV
LRDGAAGIFM AASTFPKSRE TRAPLVEELV KYRELLWPKY AYLADAPVTD DDGNKATVRF
SRKTKEQYVA TDVDGKASGW ASKFIDGKWV SESKKKAKPK AKAKPKEKK
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