| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2831 |
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| Symbol | |
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| ID | 5613662 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3421203 |
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| End bp | 3422453 |
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| Gene Length | 1251 bp |
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| Protein Length | 416 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933750 |
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| Product | LolC/E family lipoprotein releasing system, transmembrane protein |
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| Protein accession | YP_001474566 |
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| Protein GI | 157375966 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0414508 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00948545 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTCTGT GGGCAACTAT GAATTTTGCG TTATCTGCAC ATATTGGGTT CCGTTATTGG
CGAGCCAGAA AGGCCAATAC GTTTGCCTCC TTCATCACAT TTTTTGCCGT TTCGGGGATT
TTACTCGGCG TGGCCGCACT CATTATTGTC AGCTCTGTGA TGAATGGACT CGAGGGGCAA
TTGAAGCAAA GAATATTGGG TGCCGTTCCT CAGTTAACTG TGCATGCAAG TCAACCTCTA
ACCGATTGGG AAAAGCAGGT TCAAGGATTA AAAAACTTAC CCGGAGTGTT GGGGGCGACC
CCGAGTATTT CGACCCAGGC CATGGTTCAG TCGCAAACGA ATATCAGTGC CGTTCAGGTA
TACGGTATCT ATCCTGCTTA TGAGCAAGAA TTATTAAGAA CAATGAAACG AAGTTTCAAT
GGCAGCTTCG ATAAGTTAGA ACCCAGACAA TATCGCGTCA TCCTTGGCGC AGAATTAGCC
AGACGATTAG ATGTTGTAGC CGGCGATACG GTGAGGCTCC TTAGCGGTGA AGGTGTGGTG
TATTCGCCGT TAGGCCCCGT GCCGAGTCAG AGAAAGTTCA TTGTAGCCGG CGTATTTGAG
ATGGGCTCAC AAGTCGACGC CAATCTTGCC TATGTTCATT ATGAAGATGC GCAGCGGCTG
ATGCGACAAA AATCCGGTGA GATAAAACAT CTCAGGCTCT ATCTTGTCGA TCCCTTCAAT
GCCGTCAGTT TAACCTCTAA AGTTGTCGAG CAGTTCGAAA ATCAAGGTAT TGAGGTTACA
ACATCCGATT GGCGAGAGTC CTACGGCCAC CTATTCAGTG CAGTTAAGAT GGAAAAAAAT
ATGATGTCAC TGATGCTGAG CCTTATTATT GCCGTTGCGG CTTTCAATAT CGTCTCGGCG
TTAGTCATGA TGGTTGTCGA TAAAACAACC GATGTGGCCG TATTAAAAAC CCAGGGGTTG
TCGACATTGA CCGTGATGGG GATATTTATG ATCCAAGGGT CATTGAATGC CATTCTGGGA
CTGATATCCG GTTTGTTGGT TGGTATCGGT TTATCGCTTA ATCTCAATAG CATACTGAAC
ACGCTTGGGA TCTCAGTATT AGGTGCGGGC CAGTCATTGC CAGTGCAGAT TGAGTGGACA
CAATTGGGCT GGATTGTTGT CGGAACCTTG ATCATTACCT TTTTAGCCAC CGTTTACCCG
GCGCTGAGAG CCGCTGGGGT ACAACCTGCC AGCGCATTAA GATACGAATA G
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| Protein sequence | MSLWATMNFA LSAHIGFRYW RARKANTFAS FITFFAVSGI LLGVAALIIV SSVMNGLEGQ
LKQRILGAVP QLTVHASQPL TDWEKQVQGL KNLPGVLGAT PSISTQAMVQ SQTNISAVQV
YGIYPAYEQE LLRTMKRSFN GSFDKLEPRQ YRVILGAELA RRLDVVAGDT VRLLSGEGVV
YSPLGPVPSQ RKFIVAGVFE MGSQVDANLA YVHYEDAQRL MRQKSGEIKH LRLYLVDPFN
AVSLTSKVVE QFENQGIEVT TSDWRESYGH LFSAVKMEKN MMSLMLSLII AVAAFNIVSA
LVMMVVDKTT DVAVLKTQGL STLTVMGIFM IQGSLNAILG LISGLLVGIG LSLNLNSILN
TLGISVLGAG QSLPVQIEWT QLGWIVVGTL IITFLATVYP ALRAAGVQPA SALRYE
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